Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_M17
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0105 - 41104655-41104851,41105818-41107150 32 0.48
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.84
06_01_1039 - 8158929-8159023,8159663-8159966 31 0.84
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 30 1.9
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 30 2.6
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 29 4.5
03_06_0416 - 33780911-33781861 29 4.5
10_01_0322 + 3516922-3517899 29 5.9
07_03_1296 + 25583195-25584385 29 5.9
06_03_1354 - 29520376-29520582,29520668-29520795,29521015-295210... 29 5.9
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 29 5.9
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 480 GGPARPIFADVGLR*DDETHSEGD-THRSSPASQPMRIFNSERSSGVPIAPAAGP 641
G ARP+ A+ DE H E D T +SP + P + N SS PAA P
Sbjct: 276 GARARPVVANA-----DEVHQEDDVTSVTSPTTAPATLENDTSSSAAAAFPAAVP 325
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 240 TAPGKEKKGGGLYPNSGGRPLDFCLAGALP--PTIPYSP 350
T PG+E+ G PN G RP AG LP PT+P +P
Sbjct: 825 TRPGREQGGEAPEPNDGPRP-PTTRAGPLPACPTVPGAP 862
>06_01_1039 - 8158929-8159023,8159663-8159966
Length = 132
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 222 RGRAKKTAPGKEKKGGGLYPNSGGRPLDFCLAGALPPTIPYSP 350
RGR T ++++GGG GG + C A+ P +P
Sbjct: 6 RGRGSGTVRSRQRRGGGALRGVGGAAMGLCATPAMASPDPVAP 48
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 459 LLGKERKSAPLR*RGCILQPHF*GPNAELQPSPPNPVDCTESWGGGLQ 316
LL + LR C+ P +A PSPP C++ WGGG++
Sbjct: 19 LLSRRVNPRFLRTTPCVSYPGGAAASAA-PPSPPLATTCSDDWGGGMR 65
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 128 SPRQGLRWRPNPAPNADGVTLGLAVGRPHSGPRASEKDSPRERKKRG 268
SP++ L+ +P PA ADG + +PHS + SP + G
Sbjct: 39 SPKK-LKTQPQPAAEADGGAVAKPEEKPHSPVKPKRSSSPTKSNSPG 84
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 169 QRRRRHTWSSCGETTFRPAGERK 237
QR R+TW+S + TF P G+R+
Sbjct: 358 QRTDRNTWNSAHKVTFLPGGKRQ 380
>03_06_0416 - 33780911-33781861
Length = 316
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +3
Query: 129 PRGKDCGGGPTRL----PTPTASHLV*LWGDHIPARGRAKKTA 245
PR GG P+RL P+PT H P RGRA A
Sbjct: 16 PRSPTAGGTPSRLAVAPPSPTTPQCAIPASPHTPGRGRAPPPA 58
>10_01_0322 + 3516922-3517899
Length = 325
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 264 GGGLYPNSGGRPLDFCLAGALPPTIP 341
G + N G+P + CL G LP T P
Sbjct: 188 GSATFVNPAGKPYEECLVGTLPYTSP 213
>07_03_1296 + 25583195-25584385
Length = 396
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 216 PARGRAKKTAPGKEKKGGGLYPNSGG 293
P+RGR KKT ++K GGG N+ G
Sbjct: 286 PSRGRIKKTT-ARKKVGGGFKKNASG 310
>06_03_1354 -
29520376-29520582,29520668-29520795,29521015-29521099,
29521169-29521522
Length = 257
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 140 GLRWRPNPAPNADGVTLGLAVGRPHSGPRASEKDSPRERKKRGG 271
G WRP P P T ++V P + A+ + + RGG
Sbjct: 26 GWAWRPRPRPATVASTAAMSVRGPGTTQAAAAASAVHSERHRGG 69
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 240 TAPGKEKKGGGLYPNSGGRPLDFCLAGALP--PTIPYSP 350
T PG+E+ G PN G P AG LP PT+P +P
Sbjct: 675 TRPGREQGGEAPEPNGGPMP-PTAGAGPLPACPTVPGAP 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,998,811
Number of Sequences: 37544
Number of extensions: 713872
Number of successful extensions: 2246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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