Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M17
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    31   1.3  
U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical p...    28   9.3  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 58   KRQYIKRISNVNLRKGKADQSN*VPAARTAVEAQPGSQRRRRHTWSSCGETTFRPAGERK 237
            K Q ++ I N+N  + +  +   V A  +++    G  ++   T S    TT R A  R+
Sbjct: 1392 KSQCVELIDNINKIESEGLRKEDV-AIGSSITKNKGRAKKNPTTMSGSSRTTSRAANSRR 1450

Query: 238  RQPP 249
            R PP
Sbjct: 1451 RAPP 1454


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 58   KRQYIKRISNVNLRKGKADQSN*VPAARTAVEAQPGSQRRRRHTWSSCGETTFRPAGERK 237
            K Q ++ I N+N  + +  +   V A  +++    G  ++   T S    TT R A  R+
Sbjct: 1348 KSQCVELIDNINKIESEGLRKEDV-AIGSSITKNKGRAKKNPTTMSGSSRTTSRAANSRR 1406

Query: 238  RQPP 249
            R PP
Sbjct: 1407 RAPP 1410


>U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical
           protein C46G7.5 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 98  VKGRLTNLIESPRQ-GLRWRPN-PAPNADGVTLGLAVGRPHSGPRASEKDSPRERKKRGG 271
           ++ R TN  E  R   L  RP  P P++  + L  +  +  S     E D P++R+  GG
Sbjct: 103 IRSRRTNCSELCRTFRLPSRPRAPPPSSQTIRLSDSPTKKRSSSPDDENDGPKKRRNEGG 162

Query: 272 A 274
           +
Sbjct: 163 S 163


>U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical
           protein F20D6.10 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 342 TESWGGGLQQGKSQVVYP 289
           T SWGGG QQ K Q  +P
Sbjct: 232 TTSWGGGFQQYKGQYDHP 249


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 238 FFARPRAGMWSPHS*TKCDAVGVGSRVGPPPQSLPRGLN*IGQ 110
           FF +PR G  +P +  +    G G    PPP + PR     GQ
Sbjct: 208 FFTQPRGGGPAPGA-PRAGGSGAGGAPRPPPPAGPRAFGGSGQ 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,176
Number of Sequences: 27780
Number of extensions: 478739
Number of successful extensions: 1158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)