Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M14
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    31   1.1  
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008...    31   1.5  
03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281...    29   3.4  
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443...    29   4.5  
05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846     29   4.5  
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582...    29   5.9  
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    29   5.9  

>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
            19220464-19221117,19221233-19221277,19223300-19223845,
            19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
 Frame = +2

Query: 86   VSRYLQQMRLP-----TVSRIVTLLAPSVRNPPLKKTDLRPE 196
            V+R+L+Q RLP     ++SRI  L+  S   PPLK+ D  P+
Sbjct: 987  VARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQ 1028


>09_04_0315 +
           16600387-16600557,16600652-16600801,16600874-16600897,
           16601519-16602694,16603120-16603266,16603477-16603752
          Length = 647

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 153 LSGTHR*RKLICGLSELRGEQGGPYIVLGG 242
           L G ++ + L+  L EL+G+Q G Y+V+GG
Sbjct: 50  LYGKYKAKVLLSVLDELKGQQDGYYVVVGG 79


>03_03_0144 +
           14826797-14827435,14827561-14827771,14827861-14828155,
           14828285-14828674,14829131-14829208,14829296-14829518
          Length = 611

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 437 GQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPEN 267
           G  F     +Y   L +  P  NG  RTA   G     LG+ L   +V++ + AP +
Sbjct: 179 GTQFPQGADKYIDHLASVIPIANGKVRTALDTGCGVASLGAYLLKKNVLTMSFAPRD 235


>05_06_0043 +
           25143513-25143866,25144010-25144191,25144284-25144374,
           25144452-25144568,25144922-25144976,25145008-25145093,
           25145190-25145300,25145564-25145608,25145695-25145740,
           25146078-25146152,25146902-25146971,25147128-25147437,
           25147778-25147851,25147996-25148151,25148416-25148539
          Length = 631

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 438 RTNIPVGSAALLFRTRHSSAGRERCVKDGP 349
           R +I  GSA+L FR R +S    RC  D P
Sbjct: 25  RPSIHAGSASLTFRARPNSVSIVRCDADSP 54


>05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846
          Length = 361

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 137 TLLAPSVRNPPLKKTDLRPERTAGRAGWSLHRPGRAGVAPVARHSPGPKQ 286
           TLL+PS    PL+ +  +P   A  A  S   P R+ V+   R    P Q
Sbjct: 65  TLLSPSTLLSPLRGSKKKPASPAASASSSSSSPARSVVSCALRRQQPPPQ 114


>12_01_1046 -
           10756062-10756326,10757618-10757782,10757901-10758206,
           10758279-10758377,10760555-10760670,10760756-10760848,
           10760946-10761107,10761784-10762170
          Length = 530

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 214 RVVLTSSWAGRCGASRTAFSGAEAVDTTSEADRTLPRSTLTAPATGAVLDAPFPSGG 384
           R+ +++S AG   AS +  +G    D  S  +R L  S   APA+      P   GG
Sbjct: 46  RLAVSASSAGAGAASPSPAAGWGRSDAASSLERCLAASGSAAPASAPTRAPPAMKGG 102


>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 437 GQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENA 264
           G  F     +Y  +L +  P  NG  RTA   G      G+ L   +V++ + AP ++
Sbjct: 180 GTQFPQGADKYIDQLASVVPIANGTVRTALDTGCGVASWGAYLLKRNVLAMSFAPRDS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,789,006
Number of Sequences: 37544
Number of extensions: 398055
Number of successful extensions: 1306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)