Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M07
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      42   1e-04
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.4  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   9.6  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 3/157 (1%)
 Frame = -2

Query: 627 PVFATRYGKIAVNXCFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARN 454
           P+F T +GK+ V  C+         +   NGA+++      +A    + Y   W++  + 
Sbjct: 136 PIFETSFGKLGVMICWDTAFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKA 190

Query: 453 AAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTR 274
            A  NC    A NRVG +E  +                F+G S   GP G     L   +
Sbjct: 191 RAFENCIPLVAANRVGTDEKLS----------------FFGHSKIIGPTGKVIKALDEEK 234

Query: 273 DGLLIAAVDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 166
           +G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 235 EGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 440 FVIAAFLASTFHMYSLPPSPAIVAD 514
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 797 RSSXLEGXEKHSDILWNTAVVISDTGKRDREASQDPHSEG 678
           R S  +G   H D     A   S + +RDRE ++ P  EG
Sbjct: 274 RRSRDDGRPSHDDEYRRDAYSRSPSPRRDREENRSPAYEG 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,259
Number of Sequences: 5004
Number of extensions: 64349
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)