Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_M06
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 287 1e-78
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 1.4
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 28 1.8
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.1
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 27 4.1
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 7.2
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 9.5
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 9.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.5
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 9.5
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 287 bits (704), Expect = 1e-78
Identities = 121/187 (64%), Positives = 161/187 (86%)
Frame = -2
Query: 775 LLDFDQDKNIGVXWVXCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTM 596
L++FD ++N+ V W CEAG+Y+RT+CVHLGL+LGVGG M ELRRVRSG E + +VTM
Sbjct: 179 LIEFDNERNLAVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTM 238
Query: 595 HDILDAQWSYENHKDETYLRRVIKPLEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRY 416
HD+LDAQW Y+N +DE+YLRRVI+PLE LL+ +KRI +KDSAVNA+CYGAK+++PG+LRY
Sbjct: 239 HDVLDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRY 298
Query: 415 EDGIEVDQEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLG 236
E GIEV++EIV++TTKGEA+A+ +A M+T +++CDHGV AK+KR IMERD YPR+WGLG
Sbjct: 299 EAGIEVNEEIVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLG 358
Query: 235 PKASQKK 215
P++ +KK
Sbjct: 359 PQSMKKK 365
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = -1
Query: 257 PQKMGSRTESLTEKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 123
P++ G +S+ +KK+ +GKLDKYG+PNENTP +W SY++Y+
Sbjct: 352 PRRWGLGPQSM-KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = -1
Query: 254 QKMGSRTESLTEKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSR 75
Q+ S++ L KS+Y G YG + NT E +Y+ D +EG++
Sbjct: 888 QEPSSKSPLLKTPKSNYFPG----YGSLSPNTSVELPEINSDYS-------DDSDDEGNK 936
Query: 74 KRTASTANAEDPDVSIEVKQEKK 6
K+ + AE P++ ++K+++K
Sbjct: 937 KKVNLPSWAESPELREQLKRQQK 959
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = -1
Query: 227 LTEKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 72
L + + QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 329 LEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 158 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 15
PK + N+ N+KK +GD + R A+ A+A D +V KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 264 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 434
S +T +S +T ++ + VD+ TA++T T+S+ST +P+ S L P
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272
Query: 435 NS 440
+S
Sbjct: 273 SS 274
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 242 SRTESLTEKKSSYXQ-GKLDKYGKPNENTPKEWLN 141
S+ + LTE+ S GK +KY ++N KEWL+
Sbjct: 200 SKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLD 234
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 626 NAGPYSSEFDHLTSDAXHQT*MHTHRPDIRTSLAXNPXHPNILVLVEIQELLSYTVLTR 802
N PY + + SD H P IRT++ + P+ + E +L +YTV R
Sbjct: 216 NFNPYEASLANFQSDNCKLK-SHNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNR 273
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 143 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 33
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -1
Query: 791 RCTTVTPGFRPGQEYWGVXGXLRGWFVYPDD 699
+C+T PG P Y W V P+D
Sbjct: 134 KCSTADPGILPRNAYSLTYNPAHPWSVIPED 164
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 152 LLVCSHLVCHICQVSLXCM 208
+L C+H +CH+C + L +
Sbjct: 93 VLPCNHRMCHVCALRLRAL 111
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -2
Query: 616 KEGMVTMHDILDAQWSYENHKDETYLRRVIKPLEGLLIAHKRIFIKDSAVNAVCYGAKVL 437
+EG + I + + Y+ RV+K L L I+H+ F+ N Y ++
Sbjct: 1187 EEGASKLRKIFGKEMPQKMRTALNYMERVVKLLRALKISHQLYFMPLCVYNFEFYDGGLM 1246
Query: 436 LPGI 425
I
Sbjct: 1247 FQAI 1250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,447
Number of Sequences: 5004
Number of extensions: 68240
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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