Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M06
         (803 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    27   0.68 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   4.8  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.8  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 0.68
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = -1

Query: 296 RETQACHNGTRHVPQKMGSRTESLTEKKSSYXQGKLDKYGKPNENTPKEWLNSY--VNYN 123
           ++ Q  H G R+VP ++  +     +++    + + DK  +   +    W   Y  V   
Sbjct: 277 QQQQQQHQGQRYVPPQLRQQAHQQQQRQQQKVRPRPDKI-EVVPSAGHSWYTLYKTVRDA 335

Query: 122 VKKEPENG--DGVEEGSRKRTAS 60
           VK++P  G  D ++ G R   A+
Sbjct: 336 VKQDPHKGLADHLKMGKRSHAAN 358


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 556 KDETYLRRVIKPLEGLLIAHKRIFIKDSAVN 464
           K+E YLRRVI   +     +K++  +   VN
Sbjct: 93  KEEIYLRRVIGAKKDQYFLNKKVVPRSEVVN 123


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 797 SGRCTTVTPGFRPGQEYWG 741
           SGR   V  G RP Q  WG
Sbjct: 51  SGRVAVVAAGSRPIQRMWG 69


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,551
Number of Sequences: 2352
Number of extensions: 18938
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)