Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_M05
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 168 5e-42
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 165 4e-41
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 29 4.4
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 29 4.4
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 29 4.4
06_03_0543 + 21967787-21970261 29 5.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 168 bits (408), Expect = 5e-42
Identities = 74/126 (58%), Positives = 95/126 (75%)
Frame = -2
Query: 690 GVTLIAGRFTPGXFTNQIQAAFREPRFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 511
G IAGR TPG FTNQ+Q +F EPR LI+ DP DHQPI E++ NIP IA C+TDSP+
Sbjct: 99 GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158
Query: 510 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 331
R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E
Sbjct: 159 RYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218
Query: 330 QQAKEQ 313
++A Q
Sbjct: 219 EEAPAQ 224
Score = 35.1 bits (77), Expect = 0.066
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -1
Query: 805 KXFLXGSXXLPIENPXDGFVIXSRPFGQRAVXNXPAHTRCYAYCGTFHT 659
K L + IENP D V +RP+GQRAV +T +A G HT
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HT 108
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 165 bits (401), Expect = 4e-41
Identities = 72/122 (59%), Positives = 92/122 (75%)
Frame = -2
Query: 690 GVTLIAGRFTPGXFTNQIQAAFREPRFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 511
G IAGR TPG FTNQ+Q +F EPR LI+ DP DHQPI E++ NIP IA C+TDSP+
Sbjct: 99 GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158
Query: 510 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 331
R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E
Sbjct: 159 RYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218
Query: 330 QQ 325
++
Sbjct: 219 EE 220
Score = 35.1 bits (77), Expect = 0.066
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -1
Query: 805 KXFLXGSXXLPIENPXDGFVIXSRPFGQRAVXNXPAHTRCYAYCGTFHT 659
K L + IENP D V +RP+GQRAV +T +A G HT
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HT 108
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 205 TRCSSCFWSTPCSRRMVCPGTR*VEHN 125
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 446 GCWHVKC*GFVVCSPVTSAGMLWLICSSTVTLKKV 342
GC ++ C GFV+ S TS GM+ S + + KV
Sbjct: 359 GCMNMLCPGFVLLSRTTSPGMVLTTGSIPLNMTKV 393
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 500 TLLSHATPSLPTLLV*CGGCWHVKC*GFVVCS--PVT 396
++++ +PS+ + CG C+ VKC G CS PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 500 TLLSHATPSLPTLLV*CGGCWHVKC*GFVVCS--PVT 396
++++ +PS+ + CG C+ VKC G CS PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 456 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 367
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 205 TRCSSCFWSTPCSRRMVCPGTR*VEHN 125
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 12 FWLSCNIINQCRVFMQHSSLERIHPTRALRWRWLVRRQLCSTHLVPGQTILLEQG-VLQK 188
FW++ ++ + QHS + +H +L W +L + G TI G +L
Sbjct: 981 FWVTLGSVSSNQALKQHSFIRALHLDMSLSEAWAYLGKLPEFQIGLG-TIAARSGELLSP 1039
Query: 189 QELQRVQQA 215
Q L V+QA
Sbjct: 1040 QVLMAVRQA 1048
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,935,513
Number of Sequences: 37544
Number of extensions: 434070
Number of successful extensions: 1244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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