Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M02
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   175   3e-44
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   172   2e-43
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389     30   2.5  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   5.8  
06_03_0543 + 21967787-21970261                                         29   5.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  175 bits (426), Expect = 3e-44
 Identities = 84/164 (51%), Positives = 109/164 (66%)
 Frame = -1

Query: 808 KIVLAARXXYPSRXPLXGLXFHXGXSVXRAVMKFXAHTGVTPIAXRFTPGXFXNQIQXAF 629
           K+ LAAR       P   +         RAV+KF  +TG   IA R TPG F NQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 628 REPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 449
            EPR LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180

Query: 448 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 317
           LLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  172 bits (419), Expect = 2e-43
 Identities = 82/160 (51%), Positives = 106/160 (66%)
 Frame = -1

Query: 808 KIVLAARXXYPSRXPLXGLXFHXGXSVXRAVMKFXAHTGVTPIAXRFTPGXFXNQIQXAF 629
           K+ LAAR       P   +         RAV+KF  +TG   IA R TPG F NQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 628 REPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 449
            EPR LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180

Query: 448 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 329
           LLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
          Length = 711

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 719 CNEVXRAHRCYXYCGTFHTRGF 654
           CNE    ++ Y YCG  H +GF
Sbjct: 290 CNEFPGCNKIYMYCGNDHQKGF 311


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 209 TRCGSCFWSTPCSRRMVCPGTR*VEHN 129
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 460 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 371
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,778,437
Number of Sequences: 37544
Number of extensions: 384404
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)