Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_M01
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.35 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   3.3  
07_03_0846 - 21983581-21986055                                         29   3.3  
03_05_0751 - 27389910-27392105                                         29   5.8  
01_01_1235 - 10017728-10017766,10018891-10019352                       29   5.8  
01_06_0695 - 31292622-31293317                                         28   7.6  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 78  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 206
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 346 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 212
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = -3

Query: 493 LLMAXRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAG-----LSLNASKAEASLAES 329
           LL    CD N A      +   LVHAL  AA  A   +A      LS     A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 328 GKDMLTVEPRESGGSK 281
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 204 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 353
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 406 AAGGAKLPSAG--LSLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTS 263
           A G AK   AG  +SLN SKAE    +  +    ++  E   SKQ  F S
Sbjct: 246 AGGVAKRQEAGKAISLNVSKAEVLKVKKNRQSEDLDVMEGRNSKQSAFCS 295


>01_01_1235 - 10017728-10017766,10018891-10019352
          Length = 166

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 412 GRAAGGAKLPSAGLSLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 248
           G   GGA + +    L+A+     L   G  +  L + PR    S  +     TS  + S
Sbjct: 66  GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125

Query: 247 KRETRRRSPFGSRRS 203
           K  +  RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 30  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 164
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,343,030
Number of Sequences: 37544
Number of extensions: 408369
Number of successful extensions: 1163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)