Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_L23
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 679  VTFLAPLAKTLILKDR*AVLRSPMRIEHL 765
            VTFL  L +T +L +R   LR P R+ HL
Sbjct: 1047 VTFLDSLLQTALLAERSDTLRLPTRVRHL 1075


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 446 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRA 267
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 266 SH--SKRETRRRSP 231
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 233 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSV*SVDDFRSWR 102
           P   R+ +LS FF ++ SR+RRS  +    R       D  SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,342
Number of Sequences: 27780
Number of extensions: 373536
Number of successful extensions: 1082
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)