Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_L22
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 289 1e-78
07_01_0756 + 5819367-5820038,5820847-5821005 285 4e-77
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 106 2e-23
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 2.5
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.4
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.4
06_03_0637 - 22995831-22996667,22997200-22997694 28 7.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 289 bits (710), Expect = 1e-78
Identities = 133/190 (70%), Positives = 156/190 (82%)
Frame = -2
Query: 640 EHYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 461
E YL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GL
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGL 122
Query: 460 GVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 281
GVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAP
Sbjct: 123 GVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAP 182
Query: 280 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGALGNFXXXXXXXXXXXXXYLTPDLWRDI 101
RG+GIV+A VPKK+LQ AG++D +TS+RGST LGNF +LTPD WRD
Sbjct: 183 RGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDT 242
Query: 100 PLTKSPYSEF 71
KSP+ E+
Sbjct: 243 KFVKSPFQEY 252
Score = 34.7 bits (76), Expect = 0.089
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -3
Query: 726 GARQGXPERGVPVTKXGRXVREGKIDKLESI 634
G RQ E+ VPVTK GR V+EG+ K+E I
Sbjct: 36 GPRQ-EEEKWVPVTKLGRLVKEGRFSKIEEI 65
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 285 bits (698), Expect = 4e-77
Identities = 136/226 (60%), Positives = 164/226 (72%)
Frame = -2
Query: 748 RXGPAXVXGPARXTRKRGSCHQXRPXCSRRKNRQTREHYLFSLPIKEFEIIDFFLGPSLN 569
R G GP + K + K + E YL SLP+KE +I++ + P L
Sbjct: 31 RGGRGGRRGPRQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLK 89
Query: 568 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 389
DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+
Sbjct: 90 DEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVV 149
Query: 388 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCY 209
PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +
Sbjct: 150 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVF 209
Query: 208 TSARGSTGALGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 71
TS+RGST LGNF +LTPD WR+ K+P+ E+
Sbjct: 210 TSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 106 bits (254), Expect = 2e-23
Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = -2
Query: 499 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 323
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 322 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGALGNF 170
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST L NF
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = -2
Query: 571 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 392
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 391 LPV 383
+ V
Sbjct: 231 VTV 233
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 326 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 475
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 437 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 553
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 335 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 493
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>06_03_0637 - 22995831-22996667,22997200-22997694
Length = 443
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/89 (29%), Positives = 35/89 (39%)
Frame = -2
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 257
A A++ + VL + GYWGN I P KV+ G V + G
Sbjct: 288 AAAVKLCFFASARQVLGLETGYWGNAI-----FPVKVSAAAGEVAASSVIELVGV----- 337
Query: 256 PVPKKLLQMAGVQDCYTSARGSTGALGNF 170
V + +MAG +C A G TG F
Sbjct: 338 -VREAKRRMAG--ECLRWAEGRTGGADPF 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,953,490
Number of Sequences: 37544
Number of extensions: 541444
Number of successful extensions: 1281
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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