Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_L22
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 291 4e-79
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z68009-4|CAA92006.1| 152|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical pr... 28 9.1
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 9.1
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 9.1
AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm rece... 28 9.1
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 291 bits (714), Expect = 4e-79
Identities = 143/194 (73%), Positives = 156/194 (80%)
Frame = -2
Query: 661 RKNRQTREHYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 482
+K E YL SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70 KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128
Query: 481 NNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 302
+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVM 188
Query: 301 VRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGALGNFXXXXXXXXXXXXXYLT 122
VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST LGNF YLT
Sbjct: 189 VRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLT 248
Query: 121 PDLWRDIPLTKSPY 80
PDLW++ L KSPY
Sbjct: 249 PDLWKEEALEKSPY 262
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 319 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 188
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 319 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 188
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 374 TSSNW*NRQLSKDNSASNGSG 436
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>Z68009-4|CAA92006.1| 152|Caenorhabditis elegans Hypothetical
protein R09A8.4 protein.
Length = 152
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 685 GDRNPSFWXSLPGPXXGRDXNGSXXPPGLYSXGDPNP 795
G++ PS LPG + +G+ PPG S G+P P
Sbjct: 73 GEKGPSGPPGLPGLVGPKGFSGNSGPPG--SPGEPGP 107
>Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical
protein T08G11.3 protein.
Length = 601
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +2
Query: 257 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSG 436
R N ++T N P +T D R S L P +SSN + SK ++ +
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478
Query: 437 DFLAALHTQ 463
DF+ H +
Sbjct: 479 DFIQKPHVR 487
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 557 KDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 417
++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 54 RNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 557 KDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 417
++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 54 RNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm
receptor protein 30 protein.
Length = 337
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 246 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 112
R FF+ L+Y+ +P + P ++L L ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,871,885
Number of Sequences: 27780
Number of extensions: 435032
Number of successful extensions: 1264
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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