Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_L20
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.072
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.54 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 567 PPXPXYXXPPTPXPXPPP 620
           PP P +  P  P P PPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect(2) = 0.072
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 406 PPPPPPXFXXXKKXKT 453
           PPPPPP +   +K KT
Sbjct: 25  PPPPPPGYVKKRKNKT 40



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 567 PPXPXYXXPPTPXPXPPP 620
           PP P    PP+  P PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 24.6 bits (51), Expect(2) = 0.44
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 393 GGXXPPPPPPXF 428
           G   PPPPPP F
Sbjct: 7   GNPPPPPPPPGF 18



 Score = 24.2 bits (50), Expect(2) = 0.072
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 394 GXXXPPPPPPXF 429
           G   PPPPPP F
Sbjct: 7   GNPPPPPPPPGF 18



 Score = 23.8 bits (49), Expect(2) = 0.44
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 405 PPPPPPXFXXXXKXK 449
           PPPPPP +    K K
Sbjct: 25  PPPPPPGYVKKRKNK 39


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 42/192 (21%), Positives = 47/192 (24%)
 Frame = +1

Query: 310 KXPPPPXXXAGXXKTFXXXXGGXXTXXGGXXXPPPPPPXFXXXKKXKTXGGGXGXXGPPX 489
           K PPPP   +   +       G          PPPPPP             G     PP 
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSN---SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365

Query: 490 XXXXXXXXXXXXXXXXXXXXXXXGGXPPXXXTXXPPPXXLXPPPXLXSXXTPPXSSXXXX 669
                                     PP       P   L P        TPP  +    
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA--LPPLGNASRTSTPPVPTPPSL 423

Query: 670 LTXSXXXXXGSRPXXLPPXGAPAXXPXXXTXXXXXPXXXPXFFXXXSFSRAXPXXPPLXX 849
              +      S P  LP  GAPA  P   +     P              A P  P    
Sbjct: 424 PPSAPPSLPPSAPPSLP-MGAPAAPPLPPSAPIAPPLPA-------GMPAAPPLPPAAPA 475

Query: 850 PPXLPAPXXLLP 885
           PP  PAP    P
Sbjct: 476 PPPAPAPAPAAP 487



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = +2

Query: 587 TXPHPXPXSPPXXXXXXXPPPPPLXLXXSPXXXXXXXXPAPXLSPPXGXXLXXPPXPHXX 766
           T P P P S P       PP  P  L             AP   P        PP P   
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473

Query: 767 XAP 775
            AP
Sbjct: 474 PAP 476



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/51 (25%), Positives = 18/51 (35%)
 Frame = +2

Query: 569 PPXXXLTXPHPXPXSPPXXXXXXXPPPPPLXLXXSPXXXXXXXXPAPXLSP 721
           PP    + P   P +PP        PP P  +  +P        P P  +P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 566 PPPXXXLTXPHPXPXSPPXXXXXXXPPPPP 655
           PPP   +  P P P  P        PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 566 PPPXXXLTXPHPXPXS--PPXXXXXXXPPPPP 655
           PPP   +  P P P    PP       PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = +3

Query: 567 PPXPXYXXPPTPXPXP---PPXXXLXANPP 647
           PP P     PTP P P   PP   +   PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 569  PPXXXLTXPHPXPXSPPXXXXXXXPPPPPLXLXXSP 676
            PP   ++ P P P +PP        PPPPL    +P
Sbjct: 1707 PPPPPMSVP-PPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
 Frame = +2

Query: 560  GGPPPXXXLTXPHPXPXSP-PXXXXXXXPPPPPLXLXXSPXXXXXXXXPAPXLSPPXGXX 736
            GG  P   ++ P   P S  P       PPPPP+ +   P        P P   PP    
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPA 1737

Query: 737  LXXPPXPH 760
               P  P+
Sbjct: 1738 SSAPSVPN 1745



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 567  PPXPXYXXPPTPXPXPPPXXXLXANPPXL 653
            PP P    PP P   P P     A PP L
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect(2) = 1.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 393 GGXXPPPPPP 422
           GG  PPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 22.2 bits (45), Expect(2) = 1.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 405 PPPPPPXFXXXXKXKN 452
           PPPPPP      K  N
Sbjct: 308 PPPPPPPSNDFWKDSN 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,733
Number of Sequences: 5004
Number of extensions: 31412
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)