Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_L19
(960 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.8
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 30 2.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 25 4.4
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 4.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.5
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 8.6
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 8.6
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 8.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = -2
Query: 695 PPPPXPPPXXXXXXXXXXXXXXXXFFXXXXXXXPPPXFFFFFXXXTXXXXXXXPPPPXXX 516
PPPP PP PPP PPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP-----PPPGGCPPPPPPPPPGGF 780
Query: 515 KKKPPPPPXKXXF 477
K PPPPP F
Sbjct: 781 KGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = -2
Query: 695 PPPPXPPPXXXXXXXXXXXXXXXXFFXXXXXXXPPPXFFFFFXXXTXXXXXXXPPPPXXX 516
PPPP PP PPP PPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP-----PPPGGCPPPPPPPPPGGF 780
Query: 515 KKKPPPPPXKXXF 477
K PPPPP F
Sbjct: 781 KGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = -2
Query: 695 PPPPXPPPXXXXXXXXXXXXXXXXFFXXXXXXXPPPXFFFFFXXXTXXXXXXXPPPPXXX 516
PPPP PP PPP PPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP-----PPPGGCPPPPPPPPPGGF 363
Query: 515 KKKPPPPPXKXXF 477
K PPPPP F
Sbjct: 364 KGGPPPPPPPGMF 376
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 596 PPPXFFFFFXXXTXXXXXXXPPPPXXXKKKPPPPP 492
PPP F PPPP PPPPP
Sbjct: 86 PPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 29.9 bits (64), Expect = 2.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 536 PPPPXXXKKKPPPPPXK 486
PPPP ++ PPPPP +
Sbjct: 20 PPPPPSPRRAPPPPPHR 36
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 25.0 bits (52), Expect(2) = 4.4
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 325 GGGXFPK-XXGGXISPGGXGG 384
GGG FP GG S GG GG
Sbjct: 323 GGGDFPAGGGGGGYSTGGGGG 343
Score = 22.6 bits (46), Expect(2) = 4.4
Identities = 17/68 (25%), Positives = 18/68 (26%)
Frame = +1
Query: 493 GGGGGFFFXXXGGGGXXXXXXXVXXKKKKKXXGGGXXXXXXKKKXXXXXXXXXXXXXXXX 672
GG GG GGGG GG +
Sbjct: 352 GGAGGAGGYSGGGGGGGGGAAAGGGYNAGGGGGGAPQAAPAPQAAPAPAAPAGGGYNAGG 411
Query: 673 GGGXGGGG 696
GGG GGGG
Sbjct: 412 GGGAGGGG 419
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 536 PPPPXXXKKKPPPPP 492
PPPP K PPPPP
Sbjct: 88 PPPPPPTLKAPPPPP 102
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/70 (27%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Frame = -2
Query: 695 PPPPXPPPXXXXXXXXXXXXXXXXFFXXXXXXXPPPXFFFFFXXXTXXXXXXXPPPPXXX 516
PPPP P P PPP T PPPP
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQ 570
Query: 515 KKK--PPPPP 492
PPPPP
Sbjct: 571 NLSGAPPPPP 580
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 536 PPPPXXXKKKPPPPP 492
PPPP + PPPPP
Sbjct: 298 PPPPIKEESPPPPPP 312
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 536 PPPPXXXKKKPPPPP 492
PPPP + PPPPP
Sbjct: 298 PPPPIKEESPPPPPP 312
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -2
Query: 536 PPPPXXXKKKPPPPPXKXXFXKXXXKRGG 450
PPPP +PPPPP + + G
Sbjct: 96 PPPPPHYYTQPPPPPQSGYYHHQQQQHSG 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,883
Number of Sequences: 27780
Number of extensions: 215037
Number of successful extensions: 4094
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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