Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_L18
         (1167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 918 PXPPPXXGGGGXXXPPPP 865
           P PPP   G G   PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 918 PXPPPXXGGGGXXXPPPPXXXXXXXXXXPP 829
           P PPP    GG   PPPP          PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -1

Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPP 865
           P PP  G  G       P PP    GG     P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 872 GGXXXPPPPXXGGGXGXXXXXXXPPPPXXGG 964
           GG   PPPP    G G       PP    GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 887 PPPPXXGGGXGXXXXXXXPPPPXXGGXG 970
           PPPP   G  G       PPPP     G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,775
Number of Sequences: 5004
Number of extensions: 21552
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)