Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_L18
(1167 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 35 0.14
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.57
01_01_0083 + 631196-631675 32 0.76
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.3
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 26 1.7
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 31 1.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.7
01_01_0715 - 5542648-5543219,5543352-5543544 31 1.7
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 30 4.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 7.1
>07_01_0080 + 587674-588510
Length = 278
Score = 34.7 bits (76), Expect = 0.14
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 963 PPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPP 865
PP GG G P PPP G PPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPP 111
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 32.7 bits (71), Expect = 0.57
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -1
Query: 963 PPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPP 865
PP GGGG P PP GGGG PP P
Sbjct: 108 PPGGGGGGGP-----PSLPPGAGGGGGARPPAP 135
Score = 32.7 bits (71), Expect = 0.57
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 866 GGGGXXXPP--PPXXGGGXGXXXXXXXPPPPXXGGXG 970
GGGG PP PP GGG G PP P GG G
Sbjct: 110 GGGGGGGPPSLPPGAGGGGG-----ARPPAPGGGGGG 141
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 830 GGXXXXXXXXXXGGGGXXXPPPPXXGGGXG 919
GG GGGG PP P GGG G
Sbjct: 113 GGGGPPSLPPGAGGGGGARPPAPGGGGGGG 142
>01_01_0083 + 631196-631675
Length = 159
Score = 32.3 bits (70), Expect = 0.76
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +2
Query: 866 GGGGXXXP--PPPXXGGGXGXXXXXXXPPPP 952
GGGG P PP GGG G PPPP
Sbjct: 82 GGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
Score = 31.9 bits (69), Expect = 1.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 963 PPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPP 865
PP GGGG P GGGG P PP
Sbjct: 78 PPPQGGGGGYIPYYQPPAGGGGGGGGFNYPAPP 110
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = +2
Query: 866 GGGGXXX---PPPPXXGGGXGXXXXXXXP--PPPXXGGXG 970
GGGG PPPP GGG G PPP GG G
Sbjct: 83 GGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGG 122
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 887 PPPPXX-----GGGXGXXXXXXXPPPPXXGGXG 970
PPPP GGG G PPPP GG G
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGG 102
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPX--PPPXXGGGG 886
P PP GGGG PPP GGGG
Sbjct: 93 PPPPYSGGGGGSSTGGGGIYYPPPTGGGGG 122
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 866 GGGGXXXPPPPXXGGGXG 919
GGGG PPP GGG G
Sbjct: 107 GGGGIYYPPPTGGGGGGG 124
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 948 GGGXXXXXXXPXPPPXXGGG 889
GGG P PPP GGG
Sbjct: 9 GGGGGSLWGPPQPPPSTGGG 28
Score = 23.8 bits (49), Expect(2) = 1.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 897 GGGGXXXPPPP 865
GGGG PPPP
Sbjct: 55 GGGGWPPPPPP 65
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPPXXXXXXXXXXPP 829
P PP P PPP G G PPPP PP
Sbjct: 583 PVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAMPGSSKTRPPP 629
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPP 865
P PP G G P PPP G GG PPPP
Sbjct: 1137 PAPPLPEGIGGV-----PPPPPVGGLGGPPAPPPP 1166
Score = 29.5 bits (63), Expect = 5.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +2
Query: 872 GGXXXPPPPXXGGGXGXXXXXXXPPPPXXGGXG 970
G PPPP GG G PPPP GG G
Sbjct: 1105 GAGAPPPPPPPGGITGV------PPPPPIGGLG 1131
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPPXXXXXXXXXXPP 829
P PP GG G P PP G GG PPP PP
Sbjct: 1122 PPPPPIGGLGGHQAP--PAPPLPEGIGGVPPPPPVGGLGGPPAPPPP 1166
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 871 GGXXXXPPPPXGGGXXXXXXXXXPPPPXXXGG 966
GG PPPP GG PP P GG
Sbjct: 1116 GGITGVPPPPPIGGLGGHQAPPAPPLPEGIGG 1147
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPPXXXXXXXXXXPP 829
P PP G G P PPP G G PPPP PP
Sbjct: 361 PRPPGPGPG--------PPPPPGAAGRGGGGPPPPALPGGPRARGPP 399
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPPXXXXXXXXXXPP 829
P PP G P PPP G PPPP PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 875 GXXXPPPPXXGGGXGXXXXXXXPPPPXXGG 964
G PPPP GG G PPPP GG
Sbjct: 361 GPSPPPPPPPGGKKG-----GPPPPPPKGG 385
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -1
Query: 969 PXPPXXGGGGXXXXXXXPXPPPXXGGGGXXXPPPP 865
P PP G G P P P G PPPP
Sbjct: 161 PPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPPPP 195
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 729 PPPPPXXXXGGGXXKKKKK 785
PPPPP GG KKKKK
Sbjct: 38 PPPPPPPQLRGGETKKKKK 56
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 887 PPPPXXGGGXGXXXXXXXPPPP 952
PPPP GGG G PP P
Sbjct: 18 PPPPQAGGGGGGEFYRGPPPQP 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,266,150
Number of Sequences: 37544
Number of extensions: 548577
Number of successful extensions: 2795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3561544780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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