Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_L17
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    30   1.8  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    29   4.1  
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   5.4  

>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 650 EXAXPGKXGGRXXPGXXGXPGXXXXXXPXRPP 555
           E   PG+ GG   PG  G PG      P  PP
Sbjct: 215 EPGQPGEPGGPGEPGADGRPGHPGRAGPPGPP 246


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
 Frame = -2

Query: 638 PGKXGGRXXPGXXGXPGXXXXXXP--XRPPXXPPXXXGFSVHLXIXADXXSSRXGEA 474
           PG  G R  PG  G PG      P     P  PP   G+        D   +  GEA
Sbjct: 194 PGDKGSRGYPGESGEPGTPGSAGPKGNAGPAGPPGPPGYPGRPGETGDHGKTIAGEA 250


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 638 PGKXGGRXXPGXXGXPGXXXXXXPXRPP 555
           PG  G R  PG  G PG      P  PP
Sbjct: 234 PGPMGARGEPGHRGLPGDNGMPGPMGPP 261


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 638 PGKXGGRXXPGXXGXPGXXXXXXPXRPPXXP 546
           PG+ GG   PG  G PG      P  P   P
Sbjct: 206 PGRPGGSGLPGDKGLPGLPGSMGPVGPEGRP 236


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 650 EXAXPGKXGGRXXPGXXGXPGXXXXXXPXRPPXXP 546
           + + PG+ G    PG  G PG      P  PP  P
Sbjct: 250 QISLPGRKGPPGLPGQCGPPGPPGYTPPPGPPGTP 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,901,503
Number of Sequences: 27780
Number of extensions: 105383
Number of successful extensions: 1827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)