Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_L07
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   8.8  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   8.8  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   8.8  

>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 436 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 257
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 256 SH--SKRETRRRSP 221
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -2

Query: 327  ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVRHG------ 166
            A++  +W  E   A   +  LV      A+ DVEA L +GDR +  ++   R G      
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1346

Query: 165  SEGPDITQFDV 133
             EGPD  Q  +
Sbjct: 1347 QEGPDGQQHPI 1357


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -2

Query: 327  ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVRHG------ 166
            A++  +W  E   A   +  LV      A+ DVEA L +GDR +  ++   R G      
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1249

Query: 165  SEGPDITQFDV 133
             EGPD  Q  +
Sbjct: 1250 QEGPDGQQHPI 1260


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -2

Query: 327  ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVRHG------ 166
            A++  +W  E   A   +  LV      A+ DVEA L +GDR +  ++   R G      
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1260

Query: 165  SEGPDITQFDV 133
             EGPD  Q  +
Sbjct: 1261 QEGPDGQQHPI 1271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,102,015
Number of Sequences: 27780
Number of extensions: 378261
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)