Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_L06
         (1355 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB044547-1|BAB18649.1|  589|Homo sapiens heterogeneous nuclear r...    31   1.5  
X16135-1|CAA34261.1|  558|Homo sapiens protein ( Human mRNA for ...    31   1.5  
BC069184-1|AAH69184.1|  558|Homo sapiens HNRPL protein protein.        31   1.5  

>AB044547-1|BAB18649.1|  589|Homo sapiens heterogeneous nuclear
           ribonucleoprotein L protein.
          Length = 589

 Score = 31.5 bits (68), Expect(2) = 1.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 671 GGGGGGGXXXKKXXXGGGGXFFXTPXKKXPPP 576
           GGGGGGG        GGGG  +  P K    P
Sbjct: 71  GGGGGGGGGAGAAGGGGGGENYDDPHKTPASP 102



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 674 GGGGGGG 654
           GGGGGGG
Sbjct: 39  GGGGGGG 45


>X16135-1|CAA34261.1|  558|Homo sapiens protein ( Human mRNA for
           novel heterogeneous nuclear RNP protein, L protein. ).
          Length = 558

 Score = 31.5 bits (68), Expect(2) = 1.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 671 GGGGGGGXXXKKXXXGGGGXFFXTPXKKXPPP 576
           GGGGGGG        GGGG  +  P K    P
Sbjct: 40  GGGGGGGGGAGAAGGGGGGENYDDPHKTPASP 71



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 674 GGGGGGG 654
           GGGGGGG
Sbjct: 8   GGGGGGG 14


>BC069184-1|AAH69184.1|  558|Homo sapiens HNRPL protein protein.
          Length = 558

 Score = 31.5 bits (68), Expect(2) = 1.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 671 GGGGGGGXXXKKXXXGGGGXFFXTPXKKXPPP 576
           GGGGGGG        GGGG  +  P K    P
Sbjct: 40  GGGGGGGGGAGAAGGGGGGENYDDPHKTPASP 71



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 674 GGGGGGG 654
           GGGGGGG
Sbjct: 8   GGGGGGG 14


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,313,505
Number of Sequences: 237096
Number of extensions: 1271272
Number of successful extensions: 15149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9450
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 19621669972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)