Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_L04
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 35 0.016
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 32 0.085
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 28 1.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 1.8
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 28 1.8
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 2.4
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 4.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 26 5.6
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 5.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 7.4
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 34.7 bits (76), Expect = 0.016
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -3
Query: 429 NASRQCVKCGAPA--DWYCSRCAITPYCSQTCQTRDWTERHKSVCHYLAPLKTAG 271
N +R C C C+ C I YCS+ CQ DW HK C L K G
Sbjct: 44 NLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW-PFHKLECKALQASKQNG 97
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.085
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3
Query: 441 GLERNASRQCVKCGAPADWY--CSRCAITPYCSQTCQTRDWTERHKSVCHYLAPLKTAGG 268
G+ R A+ C K + + C RC T YCS+ CQ + W H C + G
Sbjct: 476 GIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCSKECQHQAW-PGHSRWCRVI----HKDG 530
Query: 267 FEAEATSSKSVSNSTPMRSSHSP 199
++ SSK +++ T S+ SP
Sbjct: 531 RNSKRESSK-INSVTESESTASP 552
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -3
Query: 222 PMRSSHSPPTKQQRGEADETDNKAKNIQEPRQNYHRPSNSGPNKNIPG 79
P RS + PP +++R + +++A +IQ + H P++ K++ G
Sbjct: 490 PTRSDN-PPNEKRRRTSSSENSRALDIQLSASDSHSPNSKSTLKSVEG 536
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1018
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = -3
Query: 324 TERH--KSVCHYLAPL-KTAGGFEAEATSSKSVSNSTPM--RSSHSPPTKQQRGEADETD 160
T +H K++ H + P K G + + SS + ++ P ++S P K + E
Sbjct: 832 TNQHGFKTMHHNVNPFTKQNGIMKGKLPSSSTSQSNKPFIEKASMHAPAKGRNSSMQEPS 891
Query: 159 NKAKNIQEPRQNYHRPSNS-GPNKNI--PGKNQD 67
+K+ ++ P+ NY S PN ++ P N D
Sbjct: 892 SKSPLLKTPKSNYFPGYGSLSPNTSVELPEINSD 925
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 374 REQYQSAGAPHFTHWREAFRSSPGVFSDSEPAPANEGSTSAESVSLALFLTTIRPSGRTD 553
+ Q Q A A + ++ G+F + P + G S + S LF + +PSG T
Sbjct: 139 QSQTQPAQANTSLFGQSNIGTTGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGSTG 198
Query: 554 LP-ADECGATCLFSACRR 604
++ T FSA ++
Sbjct: 199 FGLSNNTQTTPFFSAAQQ 216
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 600 RHAEKRQVAPHSS--AGRSVLPDGRIVVRNNANETDSAEVE 484
R Q++P SS G L +G ++ RN+ NET SA V+
Sbjct: 445 REGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSAIVD 485
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 249 SSKSVSNSTPMRSSHSPP-TKQQRGEADETDNKAK 148
S ++ ST +SSHSPP T+++RG T K
Sbjct: 146 SPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTK 180
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Frame = -3
Query: 354 CSQTCQTRDWTERHKSVCHYLAPLKTAGGFEAEATSSKSVSNSTPMRS---SHSPPTKQQ 184
C C WT + APL G E+ + + +S +++ K +
Sbjct: 30 CDTHCSGSSWTSFKSKILKICAPLCCMGSDNDESMAEMPLEPQVEPKSIENNYTLKKKNE 89
Query: 183 RGEADETDNKAKNIQEPRQN 124
G + +NK+ N + N
Sbjct: 90 EGFLSQQENKSSNQNPSKAN 109
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 252 TSSKSVSNSTPMRSSHSPPTKQQRGEADETD-NKAKNIQEPRQNYHRPSNSGPNKNIPGK 76
T +KS + + SPP T+ + A+ P++ RP S P++N P +
Sbjct: 462 TPAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEE-ERPLPSEPSQNQPAE 520
Query: 75 NQD 67
+D
Sbjct: 521 YRD 523
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 228 STPMRSSHSPP-TKQQRGEADETDNKAKNIQEPRQNYHRPSNSGPNKNIPGKNQDPRRPA 52
+T S +SPP T + R +++ Q PR+N R S N P +++ P P
Sbjct: 262 TTGQHSVNSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNFPPRDRPPLIP- 320
Query: 51 TSREAI 34
SR A+
Sbjct: 321 ISRIAV 326
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 417 QCVKCGAP--AD-WYCSRCAITPYCSQTC 340
+C+ CGAP +D +YCS C Y C
Sbjct: 57 RCIICGAPGVSDCYYCSECTRMEYDRDGC 85
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -3
Query: 267 FEAEATSSKSVSNSTPMRSSHSPPTKQQRGEADETDNKAKNIQEPRQNYHRPSNSGPNK 91
F + S +++S P S + TKQ+ ++TDN I +P + P S PN+
Sbjct: 550 FSSSVGSKQNLSMDIP--SVQNVSTKQK--STNDTDNSKLKINKPLTGGYAPLPSRPNR 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,720
Number of Sequences: 5004
Number of extensions: 54262
Number of successful extensions: 240
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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