Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K20
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 392 GAPPAPPGXXXPXXGGRAXPPPPXXXPP 475
           G PP PP    P   G A PPPP   PP
Sbjct: 759 GGPPPPP--PPPGVAG-AGPPPPPPPPP 783


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 319 LRSLISNLXNTCDLTPLPEWSCERSAW 239
           +RS+   L    D+TP+ +W  +RS W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/78 (28%), Positives = 24/78 (30%)
 Frame = +2

Query: 389 RGAPPAPPGXXXPXXGGRAXPPPPXXXPPXXPLXLLXAXXXLXPPAXXXXLXWXXGTXLP 568
           R APP PP    P   GR  PP         P     A      PA          +  P
Sbjct: 358 RSAPPPPPPRSAPST-GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416

Query: 569 XPXSPXLXPXXXXXXPPA 622
            P  P L P      PP+
Sbjct: 417 VPTPPSLPPSAPPSLPPS 434


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 407 PPGXXXPXXGGRAXPPPP 460
           P G      GGRA PPPP
Sbjct: 682 PSGKFEEGTGGRAPPPPP 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,338
Number of Sequences: 5004
Number of extensions: 16667
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)