Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K19
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.0  
06_01_0690 + 5033943-5034740                                           30   2.0  
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     30   2.7  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   4.7  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.7  
07_03_0560 + 19479597-19480667                                         28   8.2  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 650 PXLPPPXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
           P  PPP     +     P       P P      P   PPP P  P     PP
Sbjct: 568 PPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPP 620



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +2

Query: 650 PXLPPPXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
           P  PPP     S P   P       P P      P   PPP P  P     PP
Sbjct: 605 PPPPPPILPNRSVPPPPPPPP----PLPNHSVLPPPPPPPPPPSLPNRLVPPP 653


>06_01_0690 + 5033943-5034740
          Length = 265

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/83 (25%), Positives = 24/83 (28%)
 Frame = -1

Query: 786 GXXGXGGGXXXGXXXXXXGQGXXXXXXXGPXXGXEPXXXXGGGXXGXXRVQNSXXXTAPX 607
           G  G GGG          G G       GP  G       GGG  G     +     +  
Sbjct: 74  GGGGGGGGNGGSGYGSGSGSGYGQAGGYGPYGGYAQGGGGGGGGGGGQNGGSGYGSGSGS 133

Query: 606 XXXXAGXHXXXXGGAXLXVXXGG 538
               AG +    GGA      GG
Sbjct: 134 GYGQAGGYGPYGGGAYAQGGGGG 156



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = -1

Query: 786 GXXGXGGGXXXGXXXXXXGQGXXXXXXXGPXXGXEPXXXXGGGXXG 649
           G  G GGG   G      G G       GP  G       GGG  G
Sbjct: 154 GGGGGGGGGQNGGSGYGSGSGYGQAGGYGPYGGGYAQGGGGGGGGG 199


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/65 (29%), Positives = 20/65 (30%)
 Frame = -1

Query: 843 RXGEXRXAXXXXGGXXXXKGXXGXGGGXXXGXXXXXXGQGXXXXXXXGPXXGXEPXXXXG 664
           R G  R      GG     G  G GGG          G+G       G   G EP    G
Sbjct: 5   RGGGGRGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRG 64

Query: 663 GGXXG 649
            G  G
Sbjct: 65  YGGGG 69


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
 Frame = +2

Query: 650  PXLPP--PXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
            P LPP  P       P   P       P P      P   PPP P  P     PP
Sbjct: 1158 PPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPP 1212


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 650 PXLPPPXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
           P  PPP     + P   P       P P      P    PP P  P     PP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366


>07_03_0560 + 19479597-19480667
          Length = 356

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = -1

Query: 846 GRXGEXRXAXXXXGGXXXXKGXXGXGGGXXXGXXXXXXGQGXXXXXXXGPXXGXEPXXXX 667
           G  G+        GG     G  G GG    G      G+G       G   G E     
Sbjct: 66  GFGGDGGFGGGGGGGLGGGGGFGGGGGAGGGGGLGGGGGKGGGFGGGVGGGGGGEGGGLG 125

Query: 666 GGGXXG 649
           GGG  G
Sbjct: 126 GGGGGG 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,988
Number of Sequences: 37544
Number of extensions: 209710
Number of successful extensions: 1048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)