Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K19
         (852 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK025837-1|BAB15254.1|  616|Homo sapiens protein ( Homo sapiens ...    33   1.7  
BC040943-1|AAH40943.1|  498|Homo sapiens WAS protein family, mem...    32   3.0  
AL096774-6|CAC18518.1|  498|Homo sapiens WAS protein family, mem...    32   3.0  
AB026542-1|BAA81795.1|  498|Homo sapiens WASP-family protein pro...    32   3.0  
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag...    28   8.0  
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1...    28   8.0  
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1...    28   8.0  
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1...    28   8.0  
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll...    28   8.0  
U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1...    30   9.3  
AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha...    30   9.3  
AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha...    30   9.3  
AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha...    30   9.3  

>AK025837-1|BAB15254.1|  616|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22184 fis, clone HRC00983. ).
          Length = 616

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/65 (29%), Positives = 19/65 (29%)
 Frame = +2

Query: 650 PXLPPPXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPPXLXXAXL 829
           P L PP     S P   P       P P      P     P P  P     PP      L
Sbjct: 31  PSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPAL 90

Query: 830 XSPXL 844
            SP L
Sbjct: 91  ASPPL 95


>BC040943-1|AAH40943.1|  498|Homo sapiens WAS protein family, member
           2 protein.
          Length = 498

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 21/90 (23%), Positives = 26/90 (28%)
 Frame = +2

Query: 539 PPXXTXSXAPPXXXXXXPAXXXXXGAVXXKEFXTLXXPXLPPPXXXXGSXPXXGPXXXXX 718
           P     +  PP      P        +   +  ++  P  PPP    GS P  GP     
Sbjct: 260 PSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPP--GPKPGFA 317

Query: 719 XXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
             P P          PPP P   F     P
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTP 347


>AL096774-6|CAC18518.1|  498|Homo sapiens WAS protein family, member
           2 protein.
          Length = 498

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 21/90 (23%), Positives = 26/90 (28%)
 Frame = +2

Query: 539 PPXXTXSXAPPXXXXXXPAXXXXXGAVXXKEFXTLXXPXLPPPXXXXGSXPXXGPXXXXX 718
           P     +  PP      P        +   +  ++  P  PPP    GS P  GP     
Sbjct: 260 PSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPP--GPKPGFA 317

Query: 719 XXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
             P P          PPP P   F     P
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTP 347


>AB026542-1|BAA81795.1|  498|Homo sapiens WASP-family protein
           protein.
          Length = 498

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 21/90 (23%), Positives = 26/90 (28%)
 Frame = +2

Query: 539 PPXXTXSXAPPXXXXXXPAXXXXXGAVXXKEFXTLXXPXLPPPXXXXGSXPXXGPXXXXX 718
           P     +  PP      P        +   +  ++  P  PPP    GS P  GP     
Sbjct: 260 PSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPP--GPKPGFA 317

Query: 719 XXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
             P P          PPP P   F     P
Sbjct: 318 PPPAPPPPPPPMIGIPPPPPPVGFGSPGTP 347


>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
           protein.
          Length = 1838

 Score = 27.9 bits (59), Expect(2) = 8.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 567 PPGPXGXXPPXXXXGXPXPXKNFXPXXXPXFPXRXG 674
           PPGP G        G P P  N  P   P  P + G
Sbjct: 689 PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQG 724



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 537 GXRXXPXAXRPPGPXG 584
           G R  P    PPGP G
Sbjct: 643 GHRGDPGPSGPPGPPG 658


>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
           protein.
          Length = 1838

 Score = 27.9 bits (59), Expect(2) = 8.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 567 PPGPXGXXPPXXXXGXPXPXKNFXPXXXPXFPXRXG 674
           PPGP G        G P P  N  P   P  P + G
Sbjct: 689 PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQG 724



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 537 GXRXXPXAXRPPGPXG 584
           G R  P    PPGP G
Sbjct: 643 GHRGDPGPSGPPGPPG 658


>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
           protein.
          Length = 1838

 Score = 27.9 bits (59), Expect(2) = 8.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 567 PPGPXGXXPPXXXXGXPXPXKNFXPXXXPXFPXRXG 674
           PPGP G        G P P  N  P   P  P + G
Sbjct: 689 PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQG 724



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 537 GXRXXPXAXRPPGPXG 584
           G R  P    PPGP G
Sbjct: 643 GHRGDPGPSGPPGPPG 658


>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
           protein.
          Length = 1838

 Score = 27.9 bits (59), Expect(2) = 8.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 567 PPGPXGXXPPXXXXGXPXPXKNFXPXXXPXFPXRXG 674
           PPGP G        G P P  N  P   P  P + G
Sbjct: 689 PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQG 724



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 537 GXRXXPXAXRPPGPXG 584
           G R  P    PPGP G
Sbjct: 643 GHRGDPGPSGPPGPPG 658


>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V
           collagen variant protein.
          Length = 1792

 Score = 27.9 bits (59), Expect(2) = 8.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 567 PPGPXGXXPPXXXXGXPXPXKNFXPXXXPXFPXRXG 674
           PPGP G        G P P  N  P   P  P + G
Sbjct: 643 PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQG 678



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 537 GXRXXPXAXRPPGPXG 584
           G R  P    PPGP G
Sbjct: 597 GHRGDPGPSGPPGPPG 612


>U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1
            protein.
          Length = 3063

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = +3

Query: 435  RCPXXPTXXXTDICHXIXMNXEPXPXGG-SXXXRXGXRXXPXAXRPPGPXGXXPPXXXXG 611
            +CP  P    T     +     P P GG       G R    A  PPGP G   P    G
Sbjct: 2731 KCPAFPNSC-TCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQG 2789

Query: 612  XPXP 623
             P P
Sbjct: 2790 PPGP 2793


>AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha 1
            protein.
          Length = 3063

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = +3

Query: 435  RCPXXPTXXXTDICHXIXMNXEPXPXGG-SXXXRXGXRXXPXAXRPPGPXGXXPPXXXXG 611
            +CP  P    T     +     P P GG       G R    A  PPGP G   P    G
Sbjct: 2731 KCPAFPNSC-TCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQG 2789

Query: 612  XPXP 623
             P P
Sbjct: 2790 PPGP 2793


>AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha 1
            protein.
          Length = 3063

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = +3

Query: 435  RCPXXPTXXXTDICHXIXMNXEPXPXGG-SXXXRXGXRXXPXAXRPPGPXGXXPPXXXXG 611
            +CP  P    T     +     P P GG       G R    A  PPGP G   P    G
Sbjct: 2731 KCPAFPNSC-TCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQG 2789

Query: 612  XPXP 623
             P P
Sbjct: 2790 PPGP 2793


>AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha 1
            protein.
          Length = 3063

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
 Frame = +3

Query: 435  RCPXXPTXXXTDICHXIXMNXEPXPXGG-SXXXRXGXRXXPXAXRPPGPXGXXPPXXXXG 611
            +CP  P    T     +     P P GG       G R    A  PPGP G   P    G
Sbjct: 2731 KCPAFPNSC-TCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQG 2789

Query: 612  XPXP 623
             P P
Sbjct: 2790 PPGP 2793


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,778,834
Number of Sequences: 237096
Number of extensions: 1059172
Number of successful extensions: 5103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4607
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)