Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K19
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   1.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   1.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   1.8  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.5  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    28   7.3  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 501 PXPXGGSXXX-RXGXRXXPXAXRPPGPXGXXPPXXXXGXPXPXKNFXPXXXP 653
           P P GGS    R G    P   R   P G  PP    G P P     P   P
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 501 PXPXGGSXXX-RXGXRXXPXAXRPPGPXGXXPPXXXXGXPXPXKNFXPXXXP 653
           P P GGS    R G    P   R   P G  PP    G P P     P   P
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 501 PXPXGGSXXX-RXGXRXXPXAXRPPGPXGXXPPXXXXGXPXPXKNFXPXXXP 653
           P P GGS    R G    P   R   P G  PP    G P P     P   P
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = -1

Query: 807 GGXXXXKGXXGXGGGXXXGXXXXXXGQGXXXXXXXGPXXGXEPXXXXGGGXXGXXR 640
           GG     G  G GGG   G      G+G       G   G       GGG  G  R
Sbjct: 78  GGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGR 133


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = +2

Query: 638 TLXXPXLPPPXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
           ++  P  PPP     + P   P        CP      P   PPP P  P     PP
Sbjct: 24  SMGPPPCPPPPPPMCAPP---PLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 519 SXXXRXGXRXXPXAXRPPGPXGXXPPXXXXGXP 617
           S   R G    P    PPGP G  PP    G P
Sbjct: 252 SLPGRKGPPGLPGQCGPPGPPGYTPPPGPPGTP 284


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = +2

Query: 656 LPPPXXXXGSXPXXGPXXXXXXXPCPXXXXXXPXXXPPPXPXXPFXXXXPP 808
           +PPP    G     G        P P          PPP P  P     PP
Sbjct: 541 IPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPP 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,151,656
Number of Sequences: 27780
Number of extensions: 136554
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)