Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K16
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.3  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    30   2.4  
07_03_0846 - 21983581-21986055                                         29   3.1  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.1  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   5.4  
01_06_0695 - 31292622-31293317                                         28   7.2  
01_01_0012 + 71903-72935,73468-73981,74619-76008                       28   9.5  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 346 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 212
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 76  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRD 171
           PS TP  ER  S+D   PR     Y   R+RD
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRD 396


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 204 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 353
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 433 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 335
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -3

Query: 493 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 329
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 328 GKDMLTVEPRESGGSK 281
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 28  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 162
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = -3

Query: 457 QYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEAS--LAESGKDMLTVEPRESGGS 284
           Q+++       + A   AA  A + SA     A  AE S  L   G    TVE +++ G 
Sbjct: 455 QFQQALIMQQTIAAQQAAARAATMKSATEAAAARAAEISRKLKAEGFGGETVEEKDARGK 514

Query: 283 KQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFS*HVHH 167
            +   +   S  + ++R RSP   RRS  S  +S  V H
Sbjct: 515 SR---SPSPSARRSKSRSRSPIKYRRSRRSRSYSPPVRH 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,871,395
Number of Sequences: 37544
Number of extensions: 476739
Number of successful extensions: 1239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)