Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_K12
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 38 0.002
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.26
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.2
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.6
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 7.4
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.8
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.8
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -2
Query: 717 YASSHPSPXISGTSTRSSNPRFHTPTTPDLTSISNQSPDAVLEGVRAGVKASVVIRGSIS 538
Y SS S IS +ST N FH PT TS S+ + A +GV + S+ + + S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSS 854
Query: 537 VSHPXVT 517
V+ T
Sbjct: 855 VTSTAYT 861
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.26
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = -2
Query: 711 SSHPSPXISGTSTRS---SNPRFHTPTTPD---LTSISNQSP 604
S HP P IS T+T S S H PTTPD LT ++ P
Sbjct: 270 SEHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEP 311
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 98 RNMARIYQLAVDLGGRERSLNRCREKSSFVILKNRPDVVVQYG 226
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 253 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 158
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 729 GXXPYASSHPSPXIS---GTSTRSSNPRFHTPTTPDLTSISNQSPDAVLEGV 583
G P PS I G ++NP+ +++++N +P+AVL GV
Sbjct: 846 GASPITELSPSIRIDTLVGCIRSTNNPQIQNKALLLVSALANAAPEAVLHGV 897
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 325 VTHKELALKVSSIIGTRVYAFDPSCY 248
V H E LKV II T Y D S Y
Sbjct: 38 VKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 468 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 382
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 687 SGTSTRSSNPRFHTPTTPDLTSISNQSPDAVLEGVRA 577
S T++ SS+P ++ T+ DLT + + + V + V A
Sbjct: 367 SSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSA 403
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -2
Query: 711 SSHPSPXISGTSTRSSNPRFHTPTTPDLTSISNQSPDAVL 592
+S P +S FHTPT P T +S+++ ++
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIV 159
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 113 IYQLAVDLGGRERSLNRCREKSSFVILKNRPDVV 214
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,037
Number of Sequences: 5004
Number of extensions: 60197
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -