Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K12
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   5.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   5.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.8  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 709 KPPFPXDFGYINPIIKSPIPYTNHPRLNI 623
           KPP P D  Y+ P   SP     +P+L I
Sbjct: 70  KPPGPKDLVYLEP---SPPFCEKNPKLGI 95


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 709 KPPFPXDFGYINPIIKSPIPYTNHPRLNI 623
           KPP P D  Y+ P   SP     +P+L I
Sbjct: 71  KPPGPKDLVYLEP---SPPFCEKNPKLGI 96


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 624 SISNQSPDAVLEGVRAGVKASVVIRGSISVS 532
           SISN   +  +E ++  VK +  + GS++++
Sbjct: 173 SISNSYTNGCVEALKDTVKLAGTVFGSVAIA 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,568
Number of Sequences: 438
Number of extensions: 4503
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)