Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_K11
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 221 1e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 5e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 87 4e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 59 7e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.7
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 5.7
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 7.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.5
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 221 bits (539), Expect = 1e-58
Identities = 101/119 (84%), Positives = 107/119 (89%)
Frame = -2
Query: 649 AQRLFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 470
A FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKE
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316
Query: 469 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 293
I ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 317 IQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 66.1 bits (154), Expect = 6e-12
Identities = 31/46 (67%), Positives = 32/46 (69%)
Frame = -1
Query: 752 FEQEMATXXSXSSXENSYEFPDGQVITIGNERFRCPEAXFPTXVLG 615
FEQE+ T SS E SYE PDGQVITIGNERFR PEA F LG
Sbjct: 223 FEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALG 268
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (262), Expect = 5e-25
Identities = 49/119 (41%), Positives = 79/119 (66%)
Frame = -2
Query: 649 AQRLFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 470
A + F P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISE 321
Query: 469 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 293
+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 322 LRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 752 FEQEMATXXSXSSXENSYEFPDGQVITIGNERFRCPEAXFPTXVLG 615
F E+ + ++Y+ PD Q IT+G E F PE F ++G
Sbjct: 228 FRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMG 273
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -2
Query: 601 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 428
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 427 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 320
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 701 YEFPDGQVITIGNERFRCPEAXF 633
+EFPDG G ERFR E F
Sbjct: 281 FEFPDGVTHKFGQERFRISEILF 303
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 601 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 422
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 421 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 296
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 710 ENSYEFPDGQVITIGNERFRCPEAXF 633
E+ +EFPDG + G ER++ PE F
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLF 286
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 86.6 bits (205), Expect = 4e-18
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 12/117 (10%)
Frame = -2
Query: 634 FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL- 458
FQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLW 321
Query: 457 -------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 320
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 322 FERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1
Query: 704 SYEFPDGQVITIGNERFRCPEAXFPTXVLG 615
+Y PDG+VI +G+ER+ CPE F ++G
Sbjct: 239 NYTLPDGRVIKVGSERYECPECLFQPHLVG 268
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 64.1 bits (149), Expect = 2e-11
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Frame = -2
Query: 652 VAQRLFFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 476
+A +FF P + + E N + +D+RK LY N VLSGG+T++ +R+Q
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQ 347
Query: 475 KEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 338
+++ + + + +I+ ++ +VW GGS+LA F +K
Sbjct: 348 RDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKA 407
Query: 337 EYDESGPSIVHR 302
+Y+E G SI R
Sbjct: 408 DYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/111 (24%), Positives = 57/111 (51%)
Frame = -2
Query: 640 LFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 461
+ F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+T+
Sbjct: 601 VIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTS 660
Query: 460 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 308
+ P I + W G S + F+ ++++EY E GP +
Sbjct: 661 IMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 59.3 bits (137), Expect = 7e-10
Identities = 34/114 (29%), Positives = 54/114 (47%)
Frame = -2
Query: 640 LFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 461
L F PS + + GI E S+ +I+ L N V GG +PG R+ E+ +
Sbjct: 286 LLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRS 345
Query: 460 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 299
LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 346 LAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 547 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 377
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 376 SLSTFQQMWISKQEYDESGPSIVHRK 299
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 400 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 299
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 408 TPYGSVDRSSPPSLPSNRCGSRSRSTTSLAPP 313
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 687 RSGHHYRKRKIPLPRGXFSNXRSWVWKLAASTR 589
RSGH R LPR FSN R +L+A R
Sbjct: 140 RSGHPNRSIYTQLPRNEFSNARVLWNRLSARDR 172
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -3
Query: 405 PYGSVDRSSPPSLPSNRCGSRSRSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQ 238
P SVD S+PPS P S S S P SA+ A Q A G + Q
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQ 101
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 475 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 365
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 518 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLEA 339
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 338 GV 333
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,136
Number of Sequences: 5004
Number of extensions: 56786
Number of successful extensions: 165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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