Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_K07
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 31 0.84
12_02_0930 + 24508728-24508989,24509084-24509358,24510120-245103... 29 3.4
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 4.5
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 5.9
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 5.9
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 5.9
12_02_0744 - 22704637-22705341 28 7.8
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 7.8
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 113 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 262
P PT PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>12_02_0930 +
24508728-24508989,24509084-24509358,24510120-24510396,
24510631-24510707,24510827-24511123
Length = 395
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 535 LVRYRKLTRQIAPPTXNGHAPPPTESRKSC*SVNPSGVRA 654
L+R R++ A P APP T RKS S GV+A
Sbjct: 101 LLRRRQVEAPAAAPPPEMFAPPATAKRKSAASAAAEGVKA 140
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 323 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 150
PG L + R G+ GL + I +E +S +HK + SL H Y + +L +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 332 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 153
P G PL+LL GDWG + N+ + K+A T + FV + + N L
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89
Query: 152 D 150
D
Sbjct: 90 D 90
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 324 PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 157
PG+P +TP W + + +P + +P+KR VD T R ++ I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 257 PRLWGIIANPNPQHEGVSAGCPGL*ARENML 349
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>12_02_0744 - 22704637-22705341
Length = 234
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 714 RAPPRSGACGLFDSTRXISPGPDTGR 637
R PPRS S+R +SP P +GR
Sbjct: 96 RRPPRSSPAPTSSSSRGVSPPPTSGR 121
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 653 PGEIXRVESNKPQAPLLGGALPSIPLSFXFATILPPGVKIFGFPEXARRTIVXTS 817
PG R+ +++ P A P PL T++PP FP RR + S
Sbjct: 8 PGSFHRLLASRHYPPS-SPAPPPRPLLLLPKTLIPPAAAAMEFPRRGRRDVAAAS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,365,295
Number of Sequences: 37544
Number of extensions: 557312
Number of successful extensions: 1303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -