Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_K06
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 216 4e-57
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 99 4e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 93 6e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 92 7e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 84 3e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 61 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 56 5e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 2e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 7.3
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 216 bits (527), Expect = 4e-57
Identities = 99/124 (79%), Positives = 105/124 (84%)
Frame = -1
Query: 706 NERFPLPRGXFPTXVFGYESXRIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 527
NERF P F G E+ IHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIAD
Sbjct: 252 NERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIAD 311
Query: 526 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVH 347
RMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASL TFQQMWISKQEYDESGP IV+
Sbjct: 312 RMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVY 371
Query: 346 RKCF 335
RKCF
Sbjct: 372 RKCF 375
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -2
Query: 741 YEXPDGQVIXIXTKDSRCPEAXFQPSFLGMK 649
YE PDGQVI I + R PEA FQPS LG++
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALGLE 270
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 99 bits (238), Expect = 4e-22
Identities = 47/123 (38%), Positives = 77/123 (62%)
Frame = -1
Query: 703 ERFPLPRGXFPTXVFGYESXRIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 524
E F P F + G E+ +H + SI+ D+D+R LY+N VLSGG+T+ G +R
Sbjct: 258 ECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
Query: 523 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHR 344
E+ A++ ++KI A PER ++ W+GGSILASL TF+++ I+ +EY ++ +++ R
Sbjct: 318 FISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFR 376
Query: 343 KCF 335
+ F
Sbjct: 377 RRF 379
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 741 YEXPDGQVIXIXTKDSRCPEAXFQPSFLGMKA 646
Y+ PD Q I + T+ PE F P +G +A
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNPEMMGSEA 276
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 92.7 bits (220), Expect = 6e-20
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Frame = -1
Query: 649 SXRIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKI 473
S +HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 321 SVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHT 380
Query: 472 I-APPERKYSVWIGGSILASLXTFQQMWISKQEYDESG 362
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 381 AETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 741 YEXPDGQVIXIXTKDSRCPEAXFQPSFLGMKAXASTRP 628
+E PDG + R E F PSF ++ +T P
Sbjct: 281 FEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPP 318
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 92.3 bits (219), Expect = 7e-20
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 6/101 (5%)
Frame = -1
Query: 622 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERK 452
N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER
Sbjct: 333 NCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERS 391
Query: 451 YSVWIGGSILASLXTFQQMWISKQEYDESGP---SIVHRKC 338
Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 392 YASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 83.8 bits (198), Expect = 3e-17
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 12/127 (9%)
Frame = -1
Query: 706 NERFPLPRGXFPTXVFGYESXRIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 527
+ER+ P F + G E + E +++I DVDIRK LY VLSGG++MY G+
Sbjct: 252 SERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPS 311
Query: 526 RMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILASLXT-FQQMWISK 383
R++KEI L P+ + K+KI P R+++V+IGG++LA + MW+SK
Sbjct: 312 RLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSK 371
Query: 382 QEYDESG 362
E++E G
Sbjct: 372 AEWEEYG 378
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 741 YEXPDGQVIXIXTKDSRCPEAXFQPSFLG 655
Y PDG+VI + ++ CPE FQP +G
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVG 268
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 60.9 bits (141), Expect = 2e-10
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Frame = -1
Query: 703 ERFPLPRGXFPTXVFGYESXR-IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 527
ERF P F + + + E N + +D+RK LY N VLSGG+T++ +
Sbjct: 285 ERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGN 344
Query: 526 RMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLXTFQQMWI 389
R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 345 RLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCH 404
Query: 388 SKQEYDESGPSIVHR 344
+K +Y+E G SI R
Sbjct: 405 TKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 56.4 bits (130), Expect = 5e-09
Identities = 35/122 (28%), Positives = 54/122 (44%)
Frame = -1
Query: 706 NERFPLPRGXFPTXVFGYESXRIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 527
NERF +P F I E S+ +I+ L N V GG +PG
Sbjct: 278 NERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHK 337
Query: 526 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVH 347
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+
Sbjct: 338 RLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMT 396
Query: 346 RK 341
RK
Sbjct: 397 RK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/118 (22%), Positives = 56/118 (47%)
Frame = -1
Query: 703 ERFPLPRGXFPTXVFGYESXRIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 524
E+ +P F + G + I E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 523 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIV 350
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 589 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 419
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 418 SLXTFQQMWISKQEYDESGPSIVHRK 341
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 442 WIGGSILASLXTFQQM---WISKQEYDESGPSIVHRK 341
++GGSI+A + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 560 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 381
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 380 GV 375
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,082
Number of Sequences: 5004
Number of extensions: 48172
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -