Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_K05
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 213 3e-56
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 213 3e-56
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 29 0.80
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.80
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 3.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 5.6
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 213 bits (520), Expect = 3e-56
Identities = 101/155 (65%), Positives = 117/155 (75%)
Frame = -3
Query: 606 PRKTHKXFRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 427
PRKTH+ RKVACIGAWHP V +TVARAG GY HRT++N KIYRIG G D K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK--- 292
Query: 426 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 247
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351
Query: 246 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 142
E ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 62.9 bits (146), Expect = 5e-11
Identities = 33/80 (41%), Positives = 42/80 (52%)
Frame = -1
Query: 803 KKXHXXXIQXXGGPXEDKXKWAXXHXXKPFPXRXWXAQDEMIDCIGVTKGKGYKGVIFXW 624
KK H IQ GG DK +WA H K + Q+EMID IGVT+GKG +G W
Sbjct: 174 KKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233
Query: 623 HTKEVTPVRHTRXLGKLPAL 564
TK + P + R L K+ +
Sbjct: 234 GTKRL-PRKTHRGLRKVACI 252
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 213 bits (520), Expect = 3e-56
Identities = 101/155 (65%), Positives = 117/155 (75%)
Frame = -3
Query: 606 PRKTHKXFRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 427
PRKTH+ RKVACIGAWHP V +TVARAG GY HRT++N KIYRIG G D K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK--- 292
Query: 426 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 247
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351
Query: 246 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 142
E ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 62.9 bits (146), Expect = 5e-11
Identities = 33/80 (41%), Positives = 42/80 (52%)
Frame = -1
Query: 803 KKXHXXXIQXXGGPXEDKXKWAXXHXXKPFPXRXWXAQDEMIDCIGVTKGKGYKGVIFXW 624
KK H IQ GG DK +WA H K + Q+EMID IGVT+GKG +G W
Sbjct: 174 KKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233
Query: 623 HTKEVTPVRHTRXLGKLPAL 564
TK + P + R L K+ +
Sbjct: 234 GTKRL-PRKTHRGLRKVACI 252
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.80
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 686 EMIDCIGVTKGKGYKGVIFXW 624
+ +D G+TKGKG+ GV+ W
Sbjct: 149 QYVDVKGITKGKGFAGVMKRW 169
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.80
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 433 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 531
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 400 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 522
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 230 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 117
NS+ PR + R+ L L + HS+R F KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 163 HGYTQEGSYSRRSCGYHNPS 104
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 385 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPS 561
N FL + SRC V N+ I + V S ++F++ M+ + S S+ + R+ S
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY-GSPSHKIQQSLRIAS 424
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 445 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPSSNA 570
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,099
Number of Sequences: 5004
Number of extensions: 62365
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -