Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K05
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   226   1e-59
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   219   2e-57
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   3.4  
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536...    28   7.8  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  226 bits (553), Expect = 1e-59
 Identities = 105/153 (68%), Positives = 121/153 (79%)
 Frame = -3

Query: 606 PRKTHKXFRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 427
           PRKTH+  RKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295

Query: 426 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 247
           + A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR+SL   T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355

Query: 246 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 148
           E+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388



 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 32/80 (40%), Positives = 40/80 (50%)
 Frame = -1

Query: 803 KKXHXXXIQXXGGPXEDKXKWAXXHXXKPFPXRXWXAQDEMIDCIGVTKGKGYKGVIFXW 624
           KK H   IQ  GG   DK  +      K  P      +DEMID IGVTKGKGY+GV+  W
Sbjct: 177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRW 236

Query: 623 HTKEVTPVRHTRXLGKLPAL 564
               + P +  R L K+  +
Sbjct: 237 GVTRL-PRKTHRGLRKVACI 255


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  219 bits (535), Expect = 2e-57
 Identities = 101/145 (69%), Positives = 117/145 (80%)
 Frame = -3

Query: 606 PRKTHKXFRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 427
           PRKTH+  RKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295

Query: 426 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 247
           + A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR+SL   T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355

Query: 246 EKINLKFIDTSSKFGHGRFQTPADK 172
           E+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380



 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 32/80 (40%), Positives = 40/80 (50%)
 Frame = -1

Query: 803 KKXHXXXIQXXGGPXEDKXKWAXXHXXKPFPXRXWXAQDEMIDCIGVTKGKGYKGVIFXW 624
           KK H   IQ  GG   DK  +      K  P      +DEMID IGVTKGKGY+GV+  W
Sbjct: 177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRW 236

Query: 623 HTKEVTPVRHTRXLGKLPAL 564
               + P +  R L K+  +
Sbjct: 237 GVTRL-PRKTHRGLRKVACI 255


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 405  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 310
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>12_02_1033 -
           25552157-25552732,25553050-25553505,25553608-25553659,
           25553758-25553831,25553968-25554017,25554106-25554187,
           25554265-25554314,25554405-25554447,25554544-25554624,
           25554723-25554768,25554860-25554906,25554998-25555063,
           25555334-25555400,25555528-25555613
          Length = 591

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 212 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLP*PQRGCCAALSVVRE 69
           PS V+  +RRR+ R +S  + R + F+K    P P+R   ++   ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,647,640
Number of Sequences: 37544
Number of extensions: 441754
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)