Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K04
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.2  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.1  

>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 673 LDYYRKQXLITLLPWKLPIVSKAEIRTEGQ 584
           +D YRK  L  L  W+  IV   +  TEG+
Sbjct: 114 MDMYRKNVLAPLQIWQTKIVQTLDEATEGK 143


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 581 ELTFRPNFSFGYNRQFPRQQSDKXLFPVVVEQTPTGALRDSL 706
           EL F+P     Y    P  Q D+ L  +  + T    LRDSL
Sbjct: 18  ELAFQPREEIPYKSFHPDLQIDEPLEILEGDHTQYAGLRDSL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,959
Number of Sequences: 5004
Number of extensions: 54130
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)