Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_K02
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    29   1.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   7.2  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.6  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 333 CENGRCSLDGACECDSGYILSNGTCIRNNTACSANCS 223
           C+NG C+ DG C    G     G    NN   S N S
Sbjct: 65  CKNGTCAGDGFCNGTGGSASCTGCPALNNRIRSLNAS 101


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
 Frame = -1

Query: 384 ERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTACSANC-SAGGEE 208
           ER   +++   ++  G  E       G CE   G+I   G        CS +  SA   +
Sbjct: 65  ERPTIDASFLLRRAQGHSEGDEYR-HGTCESKCGHIFRKGEVFYRCKTCSVDSNSALCVK 123

Query: 207 CGLGSGCPSEQTHFPAEVTSAGCV-CVLTRTW 115
           C   +     +T F     S GC  C     W
Sbjct: 124 CFRATSHKDHETSFTVSAGSGGCCDCGNAAAW 155


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -2

Query: 695 TCDPGYKNIDDVCVPQCLDCRNGECVAPNDCLCHDNYAMSNGTRAPVCRRXCTNGACSEP 516
           T + G   + ++    C   RNG C A  +C     ++ S  T  P+C +    G C   
Sbjct: 31  TPENGVSTVKNLQHVPCKFFRNGTCTAGENC----PFSHSLETERPIC-KYFLKGNCKFG 85

Query: 515 DKC 507
            KC
Sbjct: 86  PKC 88


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 536 NGACSEPDKCTCDDGYRLSP 477
           NGAC  P +  C DG  LSP
Sbjct: 911 NGACYNPSQYVCSDG-SLSP 929


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 444 ERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 349
           ER +   CS P    C ++Y R +     CYK
Sbjct: 283 ERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYK 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,887
Number of Sequences: 5004
Number of extensions: 62319
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)