Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_J23
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 122 8e-29
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 122 8e-29
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.61
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 28 1.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.9
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 122 bits (293), Expect = 8e-29
Identities = 62/105 (59%), Positives = 73/105 (69%)
Frame = -2
Query: 592 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 413
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 412 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 278
D K NAST++D +EK ITPMGGF YG V NDFVM+ G G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -1
Query: 626 RAKGYKGVTSRWHTKKLPRKTHQG 555
R KG +G T+RW TK+LPRKTH+G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 122 bits (293), Expect = 8e-29
Identities = 62/105 (59%), Positives = 73/105 (69%)
Frame = -2
Query: 592 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 413
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 412 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 278
D K NAST++D +EK ITPMGGF YG V NDFVM+ G G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -1
Query: 626 RAKGYKGVTSRWHTKKLPRKTHQG 555
R KG +G T+RW TK+LPRKTH+G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +2
Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXLGVSYGVA 580
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 581 SLCANEK 601
SL AN +
Sbjct: 433 SLPANSR 439
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/44 (27%), Positives = 28/44 (63%)
Frame = -2
Query: 703 ARNGRTLRTILDLVAQMND*LHWCHQGPKDTKVSLLVGTQRSYP 572
A G+ + TI++++ ++ + + + K+T++ L+VG RS+P
Sbjct: 16 AIQGKNIETIINIMTRLKNEVVATEELLKETRLGLVVGKLRSHP 59
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +2
Query: 209 FSSAALFVCTRRDFLRVMIRFLGPMQQPLNHHKVVVYFTIMGETSHRCNGFLRQIILSRC 388
FS + CT D L + + P + L+ + H G ++ L RC
Sbjct: 59 FSHSCFLFCTHPDTLPTSLS-INPKKLSLSFSFPLSQKRPFPNFLHPFTG--SELSLFRC 115
Query: 389 IVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
++ F +LF S S + FL S + I + +S
Sbjct: 116 LLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 353 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,406
Number of Sequences: 5004
Number of extensions: 67999
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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