Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_J22
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    29   5.0  
12_01_0802 - 7369627-7370157,7370635-7370682                           29   6.6  
11_04_0183 + 14642037-14642069,14642099-14642220,14642791-146429...    29   6.6  
04_03_0881 + 20528257-20528760,20528837-20529283                       28   8.8  

>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 261 SNLSNTCDLTPLPVVS*MPTSMCESARSATVLTAALGVC--RMATIFAEYA 115
           S  S+TC LTP P +    TS C     A  LT  L  C    A +FA YA
Sbjct: 66  SGTSSTCPLTPSPSLLPAVTSSCVDGGGA--LTTRLRCCPPLAAWLFAAYA 114


>12_01_0802 - 7369627-7370157,7370635-7370682
          Length = 192

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 58  VINPHDNVPN-SADVIIHIHCVLREDRGHP 144
           ++NP +N+ + + DV+ H H V+  DR HP
Sbjct: 26  IVNPTENLGSMNLDVVDHCHVVVDLDRCHP 55


>11_04_0183 +
           14642037-14642069,14642099-14642220,14642791-14642974,
           14643148-14643348
          Length = 179

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 37  FLHHAEAVINPHDNVPNSADVIIHIHCVLREDRGHPADPQRRGEDGGRPR*LAHGRGHSG 216
           F+   ++   P D  P     ++H   +L +      D  RRG  GGRP   + GRG SG
Sbjct: 21  FIDKFDSRHRPIDRSPVLMSFLLHFMYILCKRFAAGGDG-RRGGSGGRPSARSGGRGGSG 79


>04_03_0881 + 20528257-20528760,20528837-20529283
          Length = 316

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 135 WPSCRPPAPR*GRWPTS 185
           WPSCR P     RWPT+
Sbjct: 52  WPSCRHPRTSSFRWPTA 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,229,725
Number of Sequences: 37544
Number of extensions: 170623
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)