Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_J17
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    30   0.45 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   1.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.0  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.2  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   5.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.4  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.7  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +1

Query: 376 TNLTSHHANYNFTGSTSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 555
           TN TS H        T+ +RR+ H    +RE      KH  H ++  P +     R +RH
Sbjct: 7   TNRTSTHKFNETDRETNHSRRHRHHHSRHRE-----SKHGRHDRSERPSSREAGDR-SRH 60

Query: 556 ERTGRLILQV 585
           ER  +  L+V
Sbjct: 61  ERFSKEPLEV 70


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 508 NLHPPAEPEHRRIARHERTGRL 573
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 386  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASP-DTNA 562
            P T+ T +   PP+          P  ++    TST  T  T +    P T ++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 563  P 565
            P
Sbjct: 1703 P 1703



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
 Frame = +2

Query: 371 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 523
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 524 RNPNTXAS 547
             P T +S
Sbjct: 381 STPITSSS 388


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 653 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 555
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 354  TMQTSYRNKSYQPPRKLQFYGFHLSYTTLLPH*GSQPRTLVKHAQART 497
            TM  + ++K     RKL+    HL + +L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 418 STSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 561
           STS   R+   E   +E   S H+H  HR++     EP    ++RH R
Sbjct: 128 STSPANRHRRKE---KERTRSNHRHGSHRRH-----EPYRTHLSRHHR 167


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 739 CPGYCTSAYNSSSSHWLKTI 798
           CP Y T  Y+S SSH++ TI
Sbjct: 50  CPKYVT-VYSSGSSHYISTI 68


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 454 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 600
           E N ++L +  K      +L PP +    R    E+TG L  Q T+TS+
Sbjct: 60  EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 341 KTFYHHANFLPQQIL 385
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 443 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTXASPDTNA 562
           P L +PT+   Q R      GK  +   NP +  SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 356 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 472
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 376 TNLTSHHANYNFTGSTSLTRRYSHTEEAN 462
           ++  S H N N     +++R+YS+T++ N
Sbjct: 83  SSFLSDHNNNNLFSDDTISRQYSNTDDIN 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,576
Number of Sequences: 5004
Number of extensions: 58029
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)