Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_J13
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 119 5e-28
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 116 5e-27
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.25
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 3.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.0
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 9.3
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 119 bits (286), Expect = 5e-28
Identities = 55/83 (66%), Positives = 66/83 (79%)
Frame = -2
Query: 569 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 390
+AS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197
Query: 389 DVVVDLFFYRDPEESEKDEQQAK 321
DV+ DL+FYRDPEE E++E+ K
Sbjct: 198 DVMPDLYFYRDPEEVEREEEAKK 220
Score = 76.6 bits (180), Expect = 4e-15
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = -1
Query: 750 CILX-RPFGQRXVIXFAAHTGVTLIAGRFTPGAFTNQIQAAFREPRXLIVLDPAQDHQPI 574
C++ R +G R V+ FAAHTG T IAGRFTPG FTN I +REPR ++V DP D Q I
Sbjct: 77 CVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAI 136
Query: 573 TE-SFI 559
E SF+
Sbjct: 137 KEASFV 142
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 116 bits (278), Expect = 5e-27
Identities = 53/81 (65%), Positives = 65/81 (80%)
Frame = -2
Query: 569 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 390
+AS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198
Query: 389 DVVVDLFFYRDPEESEKDEQQ 327
+V+ DL+FYRDPEE E++E+Q
Sbjct: 199 EVMPDLYFYRDPEEIEREEEQ 219
Score = 80.6 bits (190), Expect = 2e-16
Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Frame = -1
Query: 750 CILX-RPFGQRXVIXFAAHTGVTLIAGRFTPGAFTNQIQAAFREPRXLIVLDPAQDHQPI 574
C++ RP+G R V+ FAAHTG T IAGRFTPG FTN I +REPR +IV DP D Q I
Sbjct: 78 CVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAI 137
Query: 573 TE-SFI 559
E SF+
Sbjct: 138 KEASFV 143
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 572 LKASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 435
L+A ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 196 LEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 542 IALCNTDSPLRFVDIAIPCNTKSSHSI 462
+ LC+ +S RF D+A+ NTK +H I
Sbjct: 85 LQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 526 VLHKAITGMLTYEAFSNGLMVLCRVQYNQXTRFTECSLDL 645
V+H A G+LTY + G + + +N T+ +E ++ L
Sbjct: 345 VIHHASRGILTYVRVNEGTLSRGMMMFNPRTKKSERAIRL 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,282
Number of Sequences: 5004
Number of extensions: 54693
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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