Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_J09
         (1222 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical ...    32   0.95 
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical
           protein C02E7.7 protein.
          Length = 66

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 894 FFFXXGGGGXKKXTXPPPPPXXXXXXXXXXXXXPPP 787
           F F  GGGG      PPPPP             PPP
Sbjct: 17  FLFPSGGGGGCGCAPPPPPPACGCGGGGGGYAAPPP 52


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 25.4 bits (53), Expect(2) = 8.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 870 PPPPXXKKKGGXFFFFXXPPPPP 938
           PPPP     GG    +  PPPPP
Sbjct: 39  PPPPPPPPCGGG---YEAPPPPP 58



 Score = 21.8 bits (44), Expect(2) = 8.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 1017 PPPPPXXXGGG 1049
            PPPPP    GG
Sbjct: 55   PPPPPPSYAGG 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,654
Number of Sequences: 27780
Number of extensions: 275532
Number of successful extensions: 1113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)