Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_J06
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    39   0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.62 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   1.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 545 PPPPGXXXPPXPPPPPXXXKKKKKKKK 625
           PPPPG   P  PPPPP     KK+K K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +2

Query: 545 PPPPGXXXPPX---PPPPPXXXKKKKKK 619
           PPPP    PP    PPPPP   KK+K K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 545 PPPPGXXXPPXPPPPPXXXKKKKKKKKXXXPPP 643
           PPPPG      PPPPP          +   P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +2

Query: 545 PPPPGXXXPPXPPPPPXXXKKKKKKKKXXXPPPXXXXXXXXXPPP 679
           PPPP     P P P P              PPP         PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
 Frame = +2

Query: 545 PPPPGX----XXPPXPPPPP 592
           PPPP        PP PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 1.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 554 PGXXXPPXPPPPP 592
           P    PP PPPPP
Sbjct: 184 PSDYNPPPPPPPP 196



 Score = 21.0 bits (42), Expect(2) = 1.9
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = +2

Query: 572 PXPPPPPXXXKKKKKKKKXXXPPP 643
           P PPPPP      +       P P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP 259


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 569  PPXPPPPPXXXKKK 610
            PP PPPPP   +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 545  PPPPGXXXPPXPPPPP 592
            PPPP    PP P  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,210
Number of Sequences: 5004
Number of extensions: 23752
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)