Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I19
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   162   4e-41
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   158   1e-39
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    37   0.003

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  162 bits (394), Expect = 4e-41
 Identities = 79/118 (66%), Positives = 88/118 (74%)
 Frame = -2

Query: 674 NVINLXRTWEKXXXXXXXXXAIENPADVFVXSSRPFGQRAVLKFAAHTGATXIAGRFTPG 495
           ++INL +TWEK          IENPADV V SSRP+G RAVLKFAAHTGAT IAGRFTPG
Sbjct: 50  HIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPG 109

Query: 494 AFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 321
            FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N
Sbjct: 110 NFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPIN 167


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  158 bits (383), Expect = 1e-39
 Identities = 82/144 (56%), Positives = 95/144 (65%)
 Frame = -2

Query: 752 ATTHFGXEILISRWDLXLQXTX*WYPNVINLXRTWEKXXXXXXXXXAIENPADVFVXSSR 573
           A  H G + L  R D  +        +++NL +TWEK          IENPADV V S+R
Sbjct: 23  ANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTR 82

Query: 572 PFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYV 393
            +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+V
Sbjct: 83  TYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFV 142

Query: 392 NIPVIALCNTDSPLRFVDIAIPCN 321
           NIPVIALC+TDS L  VDIAIP N
Sbjct: 143 NIPVIALCDTDSILNHVDIAIPTN 166


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 458 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 321
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,302
Number of Sequences: 5004
Number of extensions: 48110
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)