Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I19
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   158   4e-39
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   158   4e-39
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.2  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   5.5  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.3  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    28   9.6  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  158 bits (384), Expect = 4e-39
 Identities = 73/117 (62%), Positives = 87/117 (74%)
 Frame = -2

Query: 671 VINLXRTWEKXXXXXXXXXAIENPADVFVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGA 492
           +INL +TWEK         AIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG 
Sbjct: 52  IINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGT 111

Query: 491 FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 321
           FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 112 FTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  158 bits (384), Expect = 4e-39
 Identities = 73/117 (62%), Positives = 87/117 (74%)
 Frame = -2

Query: 671 VINLXRTWEKXXXXXXXXXAIENPADVFVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGA 492
           +INL +TWEK         AIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG 
Sbjct: 52  IINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGT 111

Query: 491 FTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 321
           FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N
Sbjct: 112 FTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 546 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 439
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 536 HTGATXIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 363
           HT +T    R TP AF +   AA  E R+ +  +   ++      EA Y +I V  + + 
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329

Query: 362 DSPLR 348
           + P++
Sbjct: 330 EQPMQ 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,699
Number of Sequences: 37544
Number of extensions: 350936
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)