Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I18
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.062
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.083
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   7.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   8.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +3

Query: 543 PPPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPPXXXXXXPPP 677
           PPP        P P P             PPP PPP      PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +3

Query: 543 PPPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPP 650
           PPP       PPPPPP             PPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGV----AGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 573 PPPPPPXXXKKKKKKKXXXPPPXPPPXXXXXXPPP 677
           PPPPPP             P P PPP      PPP
Sbjct: 732 PPPPPPAVI---VPTPAPAPIPVPPPAPIMGGPPP 763



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +3

Query: 543 PPPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPPXXXXXXPPP 677
           PPP       P P P              PPP PP       PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 543 PPPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPP 650
           PPP       PPPPPP         +   P P   P
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 543 PPPRGXXXXXPPPPPPXXXKKKKKKK 620
           PPP       PPPPPP    KK+K K
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 544 PPPGGGXXXXPPPPPXXXXKKKKKKK 621
           PPPG      PPPPP     KK+K K
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 543 PPPRGXXXXXPPPPPPXXXKKKKKK 617
           PPP G      PPPPP     KK+K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 573 PPPPPPXXXKKKKKKKXXXPPPXPPP 650
           PPPPPP   +   +     PPP PPP
Sbjct: 10  PPPPPPPGFEPPSQ-----PPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = +3

Query: 543 PPPRGXXXXXP----PPPPPXXXKKKKKK 617
           PPP       P    PPPPP   KK+K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 546  PPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPPXXXXXXPPP 677
            PP        PP PP        K     PP PPP      P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +3

Query: 543  PPPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPPXXXXXXPPP 677
            PP        PP P P        K     PP PPP      P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = +3

Query: 573 PPPPPPXXXKKKKK--KKXXXPPPXPPPXXXXXXPPP 677
           PP PPP               PPP PPP       PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
 Frame = +3

Query: 546 PPRGXXXXXPPPP---------PPXXXKKKKKKKXXXPPPXPPPXXXXXXPP 674
           PP+G     PPPP         PP     +       PPP  P       PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect(2) = 7.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 573 PPPPPPXXXKKKKKKKXXXPPP 638
           PPPPPP        K    P P
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAP 327



 Score = 21.4 bits (43), Expect(2) = 7.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 555 GXXXXXPPPPPP 590
           G     PPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 8.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 579 PPPPXXXKKKKKKKXXXPPPXPPP 650
           P  P     K+      PPP PPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244



 Score = 21.0 bits (42), Expect(2) = 8.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 573 PPPPPP 590
           PPPPPP
Sbjct: 191 PPPPPP 196


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +3

Query: 546  PPRGXXXXXPPPPPPXXXKKKKKKKXXXPPPXPPP 650
            PP+      PPPP               PP  PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,998
Number of Sequences: 5004
Number of extensions: 27259
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)