Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I16
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    26   3.9  

>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 25.8 bits (54), Expect(2) = 3.9
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -1

Query: 310 GXKKXKXXXGXGGKKGGXXFXKKKKKXGGXPXXKXGEXKXXGXKG 176
           G K+ +   G  GK GG        K GG P    G     G KG
Sbjct: 286 GGKQNQGGGGGNGKNGGGGGQPNNAKGGGAPNG-GGNHPAQGKKG 329



 Score = 21.8 bits (44), Expect(2) = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 487 PPPXXGGGKKKXFXXXQXGG 428
           PPP  GGG  K     + GG
Sbjct: 242 PPPNAGGGGDKKGGGKKGGG 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,529,709
Number of Sequences: 37544
Number of extensions: 191746
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)