Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I14
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   5.2  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   5.2  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   6.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.2  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 156 SNCFANESTTGSESRPAEKIRRETQRADAWARLHVDLF 269
           S+C  +ES    ES PA K   E    D+W     ++F
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIF 336


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 495 ASERYFDKAMRHDNRLIVAAADYSPNSDHAGASHRRRPRHVLTDPSDP 352
           AS+R+ + +M   NR+I +    +P  +   +    R  H+L D   P
Sbjct: 334 ASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRP 381


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 516 IRKYMKSASERYFDKAMRHDNRLI 445
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 768 PALXSVXFTPMICKRSKMSLRNKVTLYK 685
           P   +V   P ICK ++++L+N +TL K
Sbjct: 54  PFSDAVADGPTICKGNEIALKNNITLEK 81


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 440 PPLTTPRILIMREPVTVDALDTSLRIHQIQ*PLH*MP 330
           PP+ +PR     +PV V+A+  S  +   Q PLH  P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 338 NAKVIGSDGSVRTCLGRRR 394
           N++ +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,561
Number of Sequences: 5004
Number of extensions: 53373
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)