Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I14
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32...    30   1.8  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     29   4.1  
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           29   5.4  
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   7.2  
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    28   9.5  
05_06_0241 - 26634632-26636263                                         28   9.5  

>03_01_0035 -
           322993-323280,323385-323528,324055-324180,324827-324882,
           325497-325517,327153-327420,327904-329787
          Length = 928

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 513 ELIRGPGRRVGQRSSRTTEPRQLTCKSGIVG 605
           E++R P R +G+   R T   QL C  G +G
Sbjct: 20  EIMRSPRRTIGENGYRDTRHHQLKCSDGNLG 50


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 150 VVRSPSEALGQLLANPTPLG*AFARPSVLVKLE 52
           + R+ S  LG+LLA+P+PL      PS+L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 SESRPAEKIRRETQRADAWARLHVD 263
           SES+P E  RR   R+ AWAR+  D
Sbjct: 92  SESQPLETARRGALRSHAWARVGSD 116


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 441 AAADYSPNSDHAGASHRRRPRHVLTDPSD 355
           +AA +SP  DHA A H     H  +D SD
Sbjct: 101 SAAAWSPARDHAHAHHNHHHHHHPSDSSD 129


>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 435 ADYSPNSDHAGASHRRRPRHVLTDPSDPITF 343
           AD  PN   A  SH +   HV + P  P+ F
Sbjct: 132 ADICPNPQPAYMSHPKPNPHVFSSPCSPVVF 162


>05_06_0241 - 26634632-26636263
          Length = 543

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 567 PWFVRNVDLHDDLGL*SIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNSDHAGASHRR 388
           P + R+V LH  +      K + +  +R    AMR+    I    D   + D AG + RR
Sbjct: 104 PRYHRSVQLHKTIAYNGDAKALVATIKRQERLAMRNMAASIGCFLDADDSHDRAGRARRR 163

Query: 387 RPR 379
           R R
Sbjct: 164 RRR 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,134,730
Number of Sequences: 37544
Number of extensions: 410772
Number of successful extensions: 1013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)