Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I14
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.099
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    28   6.5  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 738 MICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTXQSLQSRFCR 583
           M  K S  + +  + LYKT IRP + Y +VV +   ++   T +S+Q+ F R
Sbjct: 208 MFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 423 PNSDHAGASHRRRPRHVLTDPSD 355
           PN DH G +H RR R+   DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 423 PNSDHAGASHRRRPRHVLTDPSD 355
           PN DH G +HRR+  H   DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -1

Query: 423 PNSDHAGASHRRRPRHVLTDPSD 355
           PN DH G +HRRR R    DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 699 VTLYKTCIRPVMTYASVVFAHAARTHIDTXQSLQSRFCR 583
           + LYKT IRP + Y +VV +   ++     +S+Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -1

Query: 771 RPALXSVXFTPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTXQSLQSR 592
           R  + S     M+C+R   SL++++   K C R  M Y + +  +  +T  D   S  SR
Sbjct: 37  RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94

Query: 591 FCRL-AVGAPWFVRN 550
              L +VG+P  + N
Sbjct: 95  SSNLSSVGSPQSLAN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,260,022
Number of Sequences: 27780
Number of extensions: 320784
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)