Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I14
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.7  

>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 513 RKYMKSASERYFDKAMRHDNRLIVAAADYSPNSDH 409
           RKY +++ ER  D+A R  +R     +  S N+ H
Sbjct: 56  RKYRETSKERSRDRAERERSREPKIISSLSNNTIH 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 75  GEQMLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAWARL 254
           G  +L+Q+  D +T  +A   E   ++  C  +  T        + ++RE+    + AR 
Sbjct: 258 GFSLLAQD--DQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARF 315

Query: 255 HVDLFVEFAE 284
            +D   +FAE
Sbjct: 316 LMDSMFDFAE 325


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 156 SNCFANESTTGSESRPAEKIRRETQRADAWARL 254
           S+C    S +G ES   E    ++ ++  W +L
Sbjct: 424 SDCSTTSSLSGDESDVVELQPVKSSKSSGWRKL 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,176
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)