Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I12
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   102   5e-23
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   101   1e-22
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   5.5  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.2  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  102 bits (245), Expect = 5e-23
 Identities = 49/71 (69%), Positives = 54/71 (76%)
 Frame = -2

Query: 754 VIXSRPFGQRAVLKFPAHTGXTLIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 575
           VI SRP+G RAVLKF AHTG T IA RFTPG FTN I   +REPRL+IV DP  D Q I 
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIK 138

Query: 574 EASYVNIPVVA 542
           EAS+VNIPV+A
Sbjct: 139 EASFVNIPVIA 149



 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 44/72 (61%), Positives = 55/72 (76%)
 Frame = -3

Query: 546 LLLCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 367
           + LC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FY
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207

Query: 366 RDPEESEKDEQQ 331
           RDPEE E++E+Q
Sbjct: 208 RDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  101 bits (242), Expect = 1e-22
 Identities = 46/74 (62%), Positives = 56/74 (75%)
 Frame = -3

Query: 546 LLLCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 367
           + LC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FY
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206

Query: 366 RDPEESEKDEQQAK 325
           RDPEE E++E+  K
Sbjct: 207 RDPEEVEREEEAKK 220



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 45/71 (63%), Positives = 53/71 (74%)
 Frame = -2

Query: 754 VIXSRPFGQRAVLKFPAHTGXTLIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 575
           V+ +R +G RAVLKF AHTG T IA RFTPG FTN I   +REPRL++V DP  D Q I 
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIK 137

Query: 574 EASYVNIPVVA 542
           EAS+VNIPV+A
Sbjct: 138 EASFVNIPVIA 148


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 374 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 472
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 546 LLLCNTDSPLRFVDIAIPCNTKSSHSI 466
           L LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 634 FREPRLLIVLDPAQDHQPITEASYVNIPVVAFVQHRLPTKICGHCYP 494
           FRE  L   + PA D    T+AS V +   + V  +LP+    H  P
Sbjct: 258 FRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIP 304


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 413 FPVTSAGML--WLICSSTVTLKKVKRM 339
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 458 IKPIEWEDLVLHGIAMSTNLSGESVLHKSNHRNVD 562
           ++ IE E  V+HG      L+    +H+  H N++
Sbjct: 12  VRKIERERSVIHGALSMKRLTQNQTVHQQLHSNIE 46


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 543 LLCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLPRDQRWDV 388
           +L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L G       W V
Sbjct: 137 ILTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,550
Number of Sequences: 5004
Number of extensions: 55396
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)