Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I12
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   108   4e-24
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   3.0  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.0  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   9.0  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.0  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  108 bits (260), Expect = 4e-24
 Identities = 47/81 (58%), Positives = 60/81 (74%)
 Frame = -2

Query: 754 VIXSRPFGQRAVLKFPAHTGXTLIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 575
           V+ +RP+ QRA+LKF AHTG T I  RF+PG  TNQIQ  F+EPRLL++ DP  DHQ +T
Sbjct: 76  VVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVT 135

Query: 574 EASYVNIPVVAFVQHRLPTKI 512
           EASYV +PV++FV    P K+
Sbjct: 136 EASYVGVPVISFVNTESPLKL 156



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%)
 Frame = -3

Query: 534 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFF 370
           NT+SPL+ +DI +PCN K   SIGLMWW+LARE+L LRG + R   +     +++ DL+F
Sbjct: 149 NTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYF 208

Query: 369 YRDPEESEKDEQQA 328
           YRDP E+EK+E  A
Sbjct: 209 YRDPTETEKEETGA 222


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 570 LHMSTFLWLLLCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 430
           +H +T L+   CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 38  MHQNTRLFAKRCNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = -1

Query: 644 PSCIP*TSSLDCIGPCTR--PSTHY*SFICQHSCGCFCATQTP 522
           P CIP      C   C    P  H  S +C   C   CATQTP
Sbjct: 628 PECIP-VCEQSCNTQCVEKFPQEHCGS-VCNSQCQTACATQTP 668


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 217 CCTRCSSCFWSTPCSRRMVCP 155
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 168  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 263
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 486 TKSSHSIGLMWWLLA 442
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 168  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 263
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,423,564
Number of Sequences: 27780
Number of extensions: 333600
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)